GSE67867[Accession] - GEO DataSets - NCBI

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Competition between DNA methylation and transcription factors determines binding of NRF1

(Submitter supplied) Eukaryotic transcription factors (TFs) are key determinants of gene activity, yet they bind only a fraction of their corresponding DNA sequence motifs in any given cell type. Chromatin has the potential to restrict accessibility of binding sites; however, in which context chromatin states are instructive for TF binding remains mainly unknown. To explore the contribution of DNA methylation to constrained TF binding, we mapped DNase-I-hypersensitive sites in murine stem cells in the presence and absence of DNA methylation. more...

Organism:: Mus musculus; Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL17021 GPL16791
48 Samples

Download data: BW, TSV

Series

Accession:: GSE67867

ID:: 200067867

PubMed Similar studies SRA Run Selector

Select item 1000170212.

Illumina HiSeq 2500 (Mus musculus)

Organism:: Mus musculus

10753 Series
293063 Samples

Platform

Accession:: GPL17021

ID:: 100017021

Select item 1000167913.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11829 Series
336719 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3018916634.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: TSV

Sample

Accession:: GSM1891663

ID:: 301891663

SRA Run Selector

Select item 3018916625.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: TSV

Sample

Accession:: GSM1891662

ID:: 301891662

SRA Run Selector

Select item 3018916616.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: TSV

Sample

Accession:: GSM1891661

ID:: 301891661

SRA Run Selector

Select item 3018916547.

H3K27AC_CHIP_TKO_2

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891654

ID:: 301891654

SRA Run Selector

Select item 3018916538.

H3K27AC_CHIP_TKO_1

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891653

ID:: 301891653

SRA Run Selector

Select item 3018916529.

H3K27AC_CHIP_WT_2

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891652

ID:: 301891652

SRA Run Selector

Select item 30189165110.

H3K27AC_CHIP_WT_1

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891651

ID:: 301891651

SRA Run Selector

Select item 30189165011.

NRF1_INPUT_NP_2

Organism:: Mus musculus

Source name:: neuronal progenitors

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891650

ID:: 301891650

SRA Run Selector

Select item 30189164912.

Organism:: Mus musculus

Source name:: neuronal progenitors

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891649

ID:: 301891649

SRA Run Selector

Select item 30189164813.

NRF1_INPUT_NP_1

Organism:: Mus musculus

Source name:: neuronal progenitors

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891648

ID:: 301891648

SRA Run Selector

Select item 30189164714.

Organism:: Mus musculus

Source name:: neuronal progenitors

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891647

ID:: 301891647

SRA Run Selector

Select item 30189164615.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891646

ID:: 301891646

SRA Run Selector

Select item 30189164516.

NRF1_CHIP_TKO_2

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891645

ID:: 301891645

SRA Run Selector

Select item 30189164417.

NRF1_CHIP_TKO_1

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891644

ID:: 301891644

SRA Run Selector

Select item 30189164318.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891643

ID:: 301891643

SRA Run Selector

Select item 30189164219.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891642

ID:: 301891642

SRA Run Selector

Select item 30189164120.

Organism:: Mus musculus

Source name:: embryonic stem cells

Platform:: GPL17021
Series:: GSE67867

Download data: BW

Sample

Accession:: GSM1891641

ID:: 301891641

SRA Run Selector

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