GSE67963[Accession] - GEO DataSets - NCBI

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Select item 2000679631.

Widespread RNA Binding by Chromatin Associated Proteins

(Submitter supplied) Recent evidence suggests that RNA interaction can regulate the activity and localization of DNA binding proteins, particularly chromatin-associated proteins. However, it is unknown if these observations are specialized instances for a few key RNAs and chromatin factors in specific contexts, or a general mechanism underlying the establishment of chromatin state and regulation of gene expression. Here, we introduce formaldehyde RNA ImmunoPrecipitation (fRIP-Seq), a sensitive method for cataloging RNA-protein interactions, to survey the RNA associated with a panel of 24 chromatin-associated and traditional RNA binding proteins. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL16791
79 Samples

Download data: TXT

Series

Accession:: GSE67963

ID:: 200067963

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000167912.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11830 Series
336732 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3016597833.

wdr5_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659783

ID:: 301659783

SRA Run Selector

Select item 3016597824.

wdr5_rep2_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659782

ID:: 301659782

SRA Run Selector

Select item 3016597815.

wdr5_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659781

ID:: 301659781

SRA Run Selector

Select item 3016597806.

suz12_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659780

ID:: 301659780

SRA Run Selector

Select item 3016597797.

suz12_rep2_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659779

ID:: 301659779

SRA Run Selector

Select item 3016597788.

suz12_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659778

ID:: 301659778

SRA Run Selector

Select item 3016597779.

stag2_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659777

ID:: 301659777

SRA Run Selector

Select item 30165977610.

stag2_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659776

ID:: 301659776

SRA Run Selector

Select item 30165977511.

rbbp5_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659775

ID:: 301659775

SRA Run Selector

Select item 30165977412.

rbbp5_rep2_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659774

ID:: 301659774

SRA Run Selector

Select item 30165977313.

rbbp5_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659773

ID:: 301659773

SRA Run Selector

Select item 30165977214.

phf8_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659772

ID:: 301659772

SRA Run Selector

Select item 30165977115.

phf8_rep2_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659771

ID:: 301659771

SRA Run Selector

Select item 30165977016.

phf8_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659770

ID:: 301659770

SRA Run Selector

Select item 30165976917.

pcbx_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659769

ID:: 301659769

SRA Run Selector

Select item 30165976818.

pcbx_rep2_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659768

ID:: 301659768

SRA Run Selector

Select item 30165976719.

pcbx_rep1_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659767

ID:: 301659767

SRA Run Selector

Select item 30165976620.

pcaf_rep3_fRIP-seq

Organism:: Homo sapiens

Source name:: K562 cells

Platform:: GPL16791
Series:: GSE67963

Sample

Accession:: GSM1659766

ID:: 301659766

SRA Run Selector

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