GSE88722[Accession] - GEO DataSets - NCBI

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Select item 2000887221.

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

(Submitter supplied) Identification of in vivo direct RNA targets for RNA binding proteins (RBP) provides critical insight into their regulatory activities and mechanisms. Recently, we described a methodology for enhanced crosslinking and immunoprecipitation followed by high-throughput sequencing (eCLIP-seq) using antibodies against endogenous RNA binding proteins. However, in many cases it is desirable to profile targets of an RNA binding protein for which an immunoprecipitation-grade antibody is lacking. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20301
43 Samples

Download data: BED, BW

Series

Accession:: GSE88722

ID:: 200088722

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000203012.

Illumina HiSeq 4000 (Homo sapiens)

Organism:: Homo sapiens

9155 Series
209824 Samples

Platform

Accession:: GPL20301

ID:: 100020301

Select item 3023447503.

Input 75-150 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344750

ID:: 302344750

SRA Run Selector

Select item 3023447494.

Input 150-225 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344749

ID:: 302344749

SRA Run Selector

Select item 3023447485.

Input 50-125 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344748

ID:: 302344748

SRA Run Selector

Select item 3023447476.

Input 125-200 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344747

ID:: 302344747

SRA Run Selector

Select item 3023447467.

Input 25-100 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344746

ID:: 302344746

SRA Run Selector

Select item 3023447458.

Input 100-175 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344745

ID:: 302344745

SRA Run Selector

Select item 3023447449.

Input 175-250 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BW

Sample

Accession:: GSM2344744

ID:: 302344744

SRA Run Selector

Select item 30234474310.

V5-only 75-150 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344743

ID:: 302344743

SRA Run Selector

Select item 30234474211.

V5-only 150-225 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344742

ID:: 302344742

SRA Run Selector

Select item 30234474112.

V5-only 50-125 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344741

ID:: 302344741

SRA Run Selector

Select item 30234474013.

V5-only 125-200 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344740

ID:: 302344740

SRA Run Selector

Select item 30234473914.

V5-only 25-100 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344739

ID:: 302344739

SRA Run Selector

Select item 30234473815.

V5-only 100-175 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344738

ID:: 302344738

SRA Run Selector

Select item 30234473716.

V5-only 175-250 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344737

ID:: 302344737

SRA Run Selector

Select item 30234473617.

FLAG-only 75-150 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344736

ID:: 302344736

SRA Run Selector

Select item 30234473518.

FLAG-only 150-225 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344735

ID:: 302344735

SRA Run Selector

Select item 30234473419.

FLAG-only 50-125 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344734

ID:: 302344734

SRA Run Selector

Select item 30234473320.

FLAG-only 125-200 kDa

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL20301
Series:: GSE88722

Download data: BED, BW

Sample

Accession:: GSM2344733

ID:: 302344733

SRA Run Selector

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