GSE90454[Accession] - GEO DataSets - NCBI

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Select item 2000904541.

Genetic determinants and epigenetic effects of pioneer factor binding [ChIP-seq]

(Submitter supplied) Transcription factors (TFs) are the core drivers of gene regulatory networks that control developmental transitions and a complete understanding of how they access, alter and maintain specific gene expression patterns remains an important goal. To begin a systematic dissection of the molecular components that either enable or constrain TF activity, we investigated the genomic occupancy of two distinct TFs, the pioneer factor FOXA2 and the pluripotency-associated factor OCT4 (POU5F1), in both endogenous and ectopic settings. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis

Platform:: GPL16791
44 Samples

Download data: TXT, XLSX

Series

Accession:: GSE90454

ID:: 200090454

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000167912.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11870 Series
340422 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3029775123.

BJ H3K27me3 Unind Rep2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977512

ID:: 302977512

SRA Run Selector

Select item 3029775114.

BJ H3K27me3 Unind Rep1

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977511

ID:: 302977511

SRA Run Selector

Select item 3029775105.

BJ H3K27ac Unind Rep2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977510

ID:: 302977510

SRA Run Selector

Select item 3029775096.

BJ H3K27ac Unind Rep1

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977509

ID:: 302977509

SRA Run Selector

Select item 3029775087.

BJ H3K4me2 Unind Rep2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977508

ID:: 302977508

SRA Run Selector

Select item 3029775078.

BJ H3K4me2 Unind Rep1

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977507

ID:: 302977507

SRA Run Selector

Select item 3029775069.

BJ_ChIP_FOXA2_Unind

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977506

ID:: 302977506

SRA Run Selector

Select item 30297750510.

BJ_ChIP_FoxHnf1aCoExp_FOXA2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977505

ID:: 302977505

SRA Run Selector

Select item 30297750411.

BJ_FOXA2_Mimo_Release

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977504

ID:: 302977504

SRA Run Selector

Select item 30297750312.

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977503

ID:: 302977503

SRA Run Selector

Select item 30297750213.

BJ_FOXA2CDT1_Mimo_FOXA2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977502

ID:: 302977502

SRA Run Selector

Select item 30297750114.

BJ_H3K4me1_PreFOXA2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977501

ID:: 302977501

SRA Run Selector

Select item 30297750015.

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977500

ID:: 302977500

SRA Run Selector

Select item 30297749916.

BJ_ChIPBS_FOXA2_WT

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977499

ID:: 302977499

SRA Run Selector

Select item 30297749817.

BJ_ChIPBS_FOXA2_DeltaN_Rep2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977498

ID:: 302977498

SRA Run Selector

Select item 30297749718.

BJ_ChIPBS_FOXA2_DeltaN_Rep1

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977497

ID:: 302977497

SRA Run Selector

Select item 30297749619.

BJ_ChIPBS_FOXA2_DeltaC_Rep2

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977496

ID:: 302977496

SRA Run Selector

Select item 30297749520.

BJ_ChIPBS_FOXA2_DeltaC_Rep1

Organism:: Homo sapiens

Source name:: BJ Fibroblasts

Platform:: GPL16791
Series:: GSE90454 GSE90456

Sample

Accession:: GSM2977495

ID:: 302977495

SRA Run Selector

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