GSE97412[Accession] - GEO DataSets - NCBI

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Select item 2000974121.

Expression analysis of INO80 complex in HepG2 liver cancer cells [RNA-seq]

(Submitter supplied) We carried out two sets of experiments to understand how the INO80 complex affected gene expression. Expression analysis following depletion of INO80 with two siRNAs to determine INO80 dependent transcription programs. In addition siMCRS1 or siNTG expression analysis with and without treatment with EZH2 inhibitor (EPZ-6438) was performed to determine what genes in HepG2 cells are de-repressed by EZH2 inhibition, and test the hypothesis that changes at INO80 autonomous sites would depdend on expression of other INO80 subunits (MCRS1). more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL18573 GPL16791
19 Samples

Download data: CSV

Series

Accession:: GSE97412

ID:: 200097412

Analyze with GEO2R SRA Run Selector

Select item 1000185732.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

13252 Series
355755 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000167913.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

12551 Series
358343 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3025641174.

RNAseq on EPZ-6438 treated NTG replicate C

Organism:: Homo sapiens

Source name:: HepG2_EPZ-6438 treated NTG

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564117

ID:: 302564117

SRA Run Selector

Select item 3025641165.

RNAseq on EPZ-6438 treated NTG replicate B

Organism:: Homo sapiens

Source name:: HepG2_EPZ-6438 treated NTG

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564116

ID:: 302564116

SRA Run Selector

Select item 3025641156.

RNAseq on EPZ-6438 treated NTG replicate A

Organism:: Homo sapiens

Source name:: HepG2_EPZ-6438 treated NTG

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564115

ID:: 302564115

SRA Run Selector

Select item 3025641147.

RNAseq on EPZ-6438 treated siMCRS1 replicate B

Organism:: Homo sapiens

Source name:: HepG2_EPZ-6438 treated siMCRS1

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564114

ID:: 302564114

SRA Run Selector

Select item 3025641138.

RNAseq on EPZ-6438 treated siMCRS1 replicate A

Organism:: Homo sapiens

Source name:: HepG2_EPZ-6438 treated siMCRS1

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564113

ID:: 302564113

SRA Run Selector

Select item 3025641129.

RNAseq on DMSO treated NTG replicate C

Organism:: Homo sapiens

Source name:: HepG2_DMSO treated NTG

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564112

ID:: 302564112

SRA Run Selector

Select item 30256411110.

RNAseq on DMSO treated NTG replicate A

Organism:: Homo sapiens

Source name:: HepG2_DMSO treated NTG

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564111

ID:: 302564111

SRA Run Selector

Select item 30256411011.

RNAseq on DMSO treated siMCRS1 replicate C

Organism:: Homo sapiens

Source name:: HepG2_DMSO treated siMCRS1

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564110

ID:: 302564110

SRA Run Selector

Select item 30256410912.

RNAseq on DMSO treated siMCRS1 replicate B

Organism:: Homo sapiens

Source name:: HepG2_DMSO treated siMCRS1

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564109

ID:: 302564109

SRA Run Selector

Select item 30256410813.

RNAseq on DMSO treated siMCRS1 replicate A

Organism:: Homo sapiens

Source name:: HepG2_DMSO treated siMCRS1

Platform:: GPL18573
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564108

ID:: 302564108

SRA Run Selector

Select item 30256410714.

RNAseq on siINO80#2 replicate C

Organism:: Homo sapiens

Source name:: HepG2_siINO80#2

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564107

ID:: 302564107

SRA Run Selector

Select item 30256410615.

RNAseq on siINO80#1 replicate C

Organism:: Homo sapiens

Source name:: HepG2_siINO80#1

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564106

ID:: 302564106

SRA Run Selector

Select item 30256410516.

RNAseq on NTG replicate C

Organism:: Homo sapiens

Source name:: HepG2_NTG

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564105

ID:: 302564105

SRA Run Selector

Select item 30256410417.

RNAseq on siINO80#2 replicate B

Organism:: Homo sapiens

Source name:: HepG2_siINO80#2

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564104

ID:: 302564104

SRA Run Selector

Select item 30256410318.

RNAseq on siINO80#1 replicate B

Organism:: Homo sapiens

Source name:: HepG2_siINO80#1

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564103

ID:: 302564103

SRA Run Selector

Select item 30256410219.

RNAseq on NTG replicate B

Organism:: Homo sapiens

Source name:: HepG2_NTG

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564102

ID:: 302564102

SRA Run Selector

Select item 30256410120.

RNAseq on siINO80#2 replicate A

Organism:: Homo sapiens

Source name:: HepG2_siINO80#2

Platform:: GPL16791
Series:: GSE97412 GSE97413

Sample

Accession:: GSM2564101

ID:: 302564101

SRA Run Selector

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