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Items: 3

1.

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus

(Submitter supplied) To uncover exon junction complex (EJC) deposition sites on cellular mRNAs, RNA footprints of EJC immuo-purified from HEK293 cells were deep sequenced. The analysis of these data revealed that major “canonical” EJC occupancy site in vivo lies 24 nucleotides upstream of exon junctions (-24 position) and that the majority of exon junctions carry an EJC. Unexpectedly, we find that many sites further upstream of -24 position are also enriched in these EJC footprints. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL13393 GPL9442 GPL11154
12 Samples
Download data: BED
Series
Accession:
GSE41154
ID:
200041154

PubMed Full text in PMC Similar studies SRA Run Selector

2.

AB SOLiD System 3.0 (Homo sapiens)

Organism:
Homo sapiens
56 Series
360 Samples
Download data
Platform
Accession:
GPL9442
ID:
100009442

3.

FLAG-Magoh:eIF4AIII Rep 3 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009418
ID:
301009418

SRA Run Selector

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db=gds|term=GSM1009418[Accession]|query=1|qty=2|blobid=MCID_665665336c05354989e295ef|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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