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Items: 3

1.

A Probabilistic Model of Transcription Dynamics applied to Estrogen Signalling in Breast Cancer Cells

(Submitter supplied) Gene transcription mediated by RNA polymerase II (pol-II) is a key step in gene expression. The dynamics of pol-II moving along the transcribed region influences the rate and timing of gene expression. In this work we present a probabilistic model of transcription dynamics which is fitted to pol-II occupancy time course data measured using ChIP-Seq. The model can be used to estimate transcription speed and to infer the temporal pol-II activity profile at the gene promoter. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
8 Samples
Download data: BED
Series
Accession:
GSE44800
ID:
200044800
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

MCF7_E2_40min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091917
ID:
301091917
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