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Items: 3

1.

Multiplexing of ChIP-seq samples for a model experimental condition has minimal impact on peak detection

(Submitter supplied) ChIP-seq experiments are standard experimental procedure for interrogating epigenetic states and protein-DNA interactions. Sequencing experiments are often designed according to the trade-off between the need to obtain maximum sequencing coverage limited funds. Multiplexing samples is a common approach to minimize cost and maximize information yield. We therefore performed an extensive ChiP-seq multiplexing study to gain a better understanding of the effect of multiplexing on the resulting peak detection and genomic annotation and to provide solid guidelines for multiplexing ChIP-seq studies. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL16791
24 Samples
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Series
Accession:
GSE64504
ID:
200064504
2.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
3.

Sample_H3K4me3_Index_12_lane3

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly6
Platform:
GPL16791
Series:
GSE64504
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Sample
Accession:
GSM1572771
ID:
301572771
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Supplemental Content

db=gds|term=GSM1572771[Accession]|query=1|qty=2|blobid=MCID_66706755909a3d46ade2b805|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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