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Items: 3

1.

Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP

(Submitter supplied) Post-transcriptional gene regulation relies on hundreds of RNA binding proteins (RBPs) but the function of most RBPs is unknown. The human RBP HuR/ELAVL1 is a conserved mRNA stability regulator. We used PAR-CLIP, a method based on RNA-protein crosslinking, to identify transcriptome wide ~26,000 HuR binding sites. These sites were on average highly conserved, enriched for HuR binding motifs and mainly located in 3' untranslated regions. more...
Organism:
Homo sapiens
Type:
Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL11154 GPL9115
9 Samples
Download data: BED, TXT, WIG
Series
Accession:
GSE29943
ID:
200029943
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

HeLa ELAVL1/HuR siRNA1 5d

Organism:
Homo sapiens
Source name:
HeLa ELAVL1/HuR siRNA1 5d
Platform:
GPL11154
Series:
GSE29943
Download data: WIG
Sample
Accession:
GSM741172
ID:
300741172
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db=gds|term=GSM741172[Accession]|query=1|qty=2|blobid=MCID_6642a8a6ec958f7d10f13fd0|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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