GSM797458[Accession] - GEO DataSets

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Items: 4

Select item 2000322601.

Relationship between DNMT1-RNA interactions, DNA methylation and gene expression

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL11154 GPL6244 GPL10999
8 Samples

Download data: BSP, CEL, GTF, WIG

Series

Accession:: GSE32260

ID:: 200032260

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000321682.

RRBS (Reduced Representation Bisulfite Sequencing) of HL60

(Submitter supplied) We exploited the methylation genome-scale screening RRBS to correlate the RNA species physically associated with DNMT1 and proximal to the annotated genes to the methylation status of the corresponding loci. Out of 15275 non ambiguous gene loci identified by DNMT1 RIP-Seq, 9436 loci were covered by RRBS. These 9436 loci were clustered according to the fold of specific DNMT1 library peaks enrichment (defined as the ratio of the sum of the area under the curve of specific DNMT1 library peaks covering the gene loci). more...