Similar studies for GEO DataSets (Select 200011269) - GEO DataSets

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Items: 16

Select item 2000112691.

Transcriptome analysis of Leishmania infantum PNA+ and PNA- promastigotes by complete shotgun DNA microarrays

(Submitter supplied) Leishmania infantum is the causative agent of zoonotic visceral leishmaniasis in Mediterranean areas and also acts as an opportunistic parasite in HIV patients. Metacyclic promastigotes are transmitted during bloodmeals of the sand-fly host after development. Metacyclogenesis can be micmiked in axenic cultures and peanut lectin (PNA) agglutination followed by two-step centrifugation allows the separation of procyclic and metacyclic promastigotes in L. more...

Organism:: Leishmania infantum

Type:: Expression profiling by array

Platform:: GPL6781
3 Samples

Download data

Series

Accession:: GSE11269

ID:: 200011269

Select item 2000709922.

Comparative high-throughput gene expression analysis between cultured and sand fly vector-derived Leishmania infantum promastigotes.

(Submitter supplied) Leishmania infantum (Kinetoplastida:Trypanosomatidae) is the etiological agent of zoonotic visceral leishmaniasis in the Mediterranean basin. The motile promastigote stage infects the hematophagous sand fly vector host and amastigotes survives and multiplies within phagocytes of the mammalian host. Promastigotes are routinely cultured in liquid undefined media and are considered to mimic the environment within the sand fly gut. more...

Organism:: Leishmania infantum

Type:: Expression profiling by array

Platform:: GPL6781
1 Sample

Download data: TXT

Series

Accession:: GSE70992

ID:: 200070992

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000139833.

Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum

(Submitter supplied) Transcriptional analysis of L. infantum promastigote compared to L. infantum intracellular amastigote and transcriptional analysis of L. infantum promastigote compared to L. infantum axenic amastigote. The full-genome DNA microarrays includes one 70-oligonucleotides probe for each gene of L.infantum. Keywords: stage and culture condition

Organism:: Leishmania major; Leishmania infantum

Type:: Expression profiling by array

Platform:: GPL6855
10 Samples

Download data: GPR

Series

Accession:: GSE13983

ID:: 200013983

Select item 2000044444.

Interspecies expression profiling in Leishmania

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Leishmania major; Leishmania mexicana

Type:: Expression profiling by array

Platform:: GPL3505
11 Samples

Download data: TXT

Series

Accession:: GSE4444

ID:: 200004444

Select item 2000044315.

Expression profiling reveals differential gene expression Leishmania mexicana

(Submitter supplied) We examined the Leishmania mexicana transcriptome to identify differentially regulated mRNAs using high-density whole-genome oligonucleotide microarrays designed from the genome data of a closely related species, Leishmania major. Statistical analysis on array hybridization data representing 8156 predicted coding regions revealed 288 genes (3.5% of all genes) whose steady-state mRNA levels meet criteria for differential regulation between promastigotes and lesion-derived amastigotes. more...

Organism:: Leishmania mexicana; Leishmania major

Type:: Expression profiling by array

Platform:: GPL3505
9 Samples

Download data: TXT

Series

Accession:: GSE4431

ID:: 200004431

Select item 2000044306.

Interspecies hybridization versus intra-species hybridization for Leishmania promastigote RNA.

Organism:: Leishmania mexicana; Leishmania major

Type:: Expression profiling by array

Platform:: GPL3505
4 Samples

Download data: TXT

Series

Accession:: GSE4430

ID:: 200004430

Select item 1000035057.

Leishmania major whole-genome 60-mer DNA oligonucleotide microarray

(Submitter supplied) This platform supports 11 60-mer DNA oligonucleotide probes synthesized twice on each slide for 8160 (98%) of the Leishmania major Friedlin genes annotated at www.genedb.org. Refer to: Timothy R. Holzer, W.R. McMaster, James D. Forney. “Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana.” Molecular and Biochemical Parasitology 146 (2): 198-218. more...

Organism:: Leishmania major

3 Series
11 Samples

Download data

Platform

Accession:: GPL3505

ID:: 100003505

PubMed Similar studies

Select item 2001026688.

Comparison of cultured and sand fly-derived promastigotes by means of RNA-Seq

(Submitter supplied) A laboratory colony of Phlebotomus perniciosus sand flies was maintained. Sand flies were infected with cultured Leishmania infantum promastigotes in stationary phase. Ten infected sand flies were dissected after 5 days and promastigotes within the gut pooled. The cells were immediately washed in PBS once and lysed in TRIzol reagent (Life Technologies). RNA isolation was completed according to the manufacturer's instructions, obtaining 63ng. more...

Organism:: Leishmania infantum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23911
2 Samples

Download data: XLSX

Series

Accession:: GSE102668

ID:: 200102668

PubMed Similar studies SRA Run Selector

Select item 2000104079.

Transcriptional analysis of wild-type Leishmania species between both stages using full-genome DNA microarrays

(Submitter supplied) Transcriptional analyses of L. infantum promastigote compared to L. infantum intracellular amastigote, and L. major promastigote compared to L. major intracellular amastigote The full-genome DNA microarray includes one 70mer-oligonucleotide probe for each gene of L. infantum and for each gene of L.major LV39 Keywords: stage-specific comparison

Organism:: Leishmania major; Leishmania infantum

Type:: Expression profiling by array

Platform:: GPL6855
10 Samples

Download data: GPR

Series

Accession:: GSE10407

ID:: 200010407

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002936910.

Application of Serial Analysis of Gene Expression to the study of the gene expression profile of Leishmania infantum chagasi promastigote

(Submitter supplied) This study describes the application of the LongSAGE methodology to study the gene expression profile in Leishmania infantum chagasi. A tag library was created using the LongSAGE method and consisted of 14,208 tags of 17 bases. Of these, 8,427 (59.3%) were distinct. BLAST research of the 1,645 most abundant tags showed that 12.8% of them identified the coding sequences of genes, while 82% (1,349/1,645) identified one or more genomic sequences that did not correspond with open reading frames. more...

Organism:: Leishmania chagasi

Type:: Expression profiling by SAGE

Platform:: GPL11414
1 Sample

Download data

Series

Accession:: GSE29369

ID:: 200029369

PubMed Full text in PMC Similar studies

Select item 20000690111.

Expression data for stress treatment in rice seedlings

(Submitter supplied) Drought, salinity and sub-optimal temperatures are stresses that cause adverse effects on the growth of plants and the productivity of crops. In this study, we have analyzed the expression profiles of rice genes under control and abiotic stress conditions using microarray technology to identify the genes differentially expressed during various abiotic stresses. Keywords: Stress treatment

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
12 Samples

Download data: CEL

Series

Accession:: GSE6901

ID:: 200006901

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000689312.

Expression data for reproductive development in rice

(Submitter supplied) Plants initially undergo a period of vegetative development, in which it produces leaves from shoot apical meristem (SAM) and roots from the root apical meristem. Later in development, the SAM undergoes a change in fate and enters reproductive development called as floral transition, producing flowers and seeds. Our understanding of the molecular and genetic mechanisms that underlie reproductive development in plants has increased tremendously in the past decade, essentially through the work on Arabidopsis. more...

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
45 Samples

Download data: CEL

Series

Accession:: GSE6893

ID:: 200006893

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000516713.

Rice seedling hormone treatment

(Submitter supplied) Indica rice seedlings of IR64 variety were grown hydroponically for 7-days in a culture room with a daily photoperiodic cycle of 14h light and 10h dark. Seedlings were incubated in 0.1% dimethyl sulfoxide (control) or 50 micromolar solutions of indole-3-acetic acid (IAA treatment) and benzyl aminopurine (BAP treatment) for 1h and 3h. Equal amounts of 1h and 3h samoles were pooled for each treatment before RNA isolation. more...

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
6 Samples

Download data: CAB, CEL, EXP

Series

Accession:: GSE5167

ID:: 200005167

Select item 20001036314.

Within and between-species transcript profiling during cotton fibre development

(Submitter supplied) A gene expression profiling study on two major cotton species that are cultivated for fibre, Gossypium hirsutum (L.) and Gossypium barbadense (L.), at different stages during fibre development using a printed cDNA microarray was undertaken to identify potential candidate genes for manipulation to improve fibre quality. Keywords: Species comparison, development

Organism:: Gossypium barbadense; Gossypium hirsutum

Type:: Expression profiling by array

Platform:: GPL4043
18 Samples

Download data: GPR

Series

Accession:: GSE10363

ID:: 200010363

Select item 20001407615.

Adaptive differences in gene expression associated with stress tolerance in the soil arthropod Orchesella cincta

(Submitter supplied) Field-selected tolerance to heavy metals has been reported for Orchesella cincta (Arthropoda: Collembola) populations occurring at metal-contaminated mining sites. This tolerance is correlated with heritable increase of metal excretion efficiency; less pronounce cadmium induced growth reduction and, over-expression of the metallothionein gene. We applied transcriptomics to determine differential gene expression caused by this abiotic stress in reference and cadmium tolerant populations. more...

Organism:: Orchesella cincta

Type:: Expression profiling by array

Platform:: GPL7876
16 Samples

Download data: TXT

Series

Accession:: GSE14076

ID:: 200014076

Select item 20020267416.

Differential gene expression in DEVH1 knock-in Leishmania infantum promastigotes

(Submitter supplied) The DEAD/H RNA helicase LINF_220021200 (DEVH1) gene from Leishmania infantum (Kinetoplastida:Trypanosomatidae) was cloned in the pTEX expression plasmid vector for trypanosomatids. Leishmania infantunm promastigotes were transfected and a knock-in L. infantum promastigote cell line was selected with geneticin (G418). A pTEX control promastigote line was also generated. Then, three independent biological replicate cultures of each pTEX-DEVH1 and pTEX promastigote lines were performed in the presence of the selective agent. more...