GEO DataSets

(Submitter supplied) Chinese cordyceps is of particular interest for its confined distribution, mysterious lifecycle, ecological importance and developmental biology. The large scale artificial cultivation of this fungus has been succeeded in China until recently but with low efficiency and high cost being ascribed to too much unsolved biological issues, such as gene expression during development and the sexuality reproduction. more...

Organism:

Ophiocordyceps sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25863

18 Samples

Download data: XLS

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Ophiocordyceps sinensis

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL29325

18 Samples

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(Submitter supplied) Ophiocordyceps sinensis (Berk.) Sacc., a complex of larval carcass (sclerotium) and stroma formed by the fungus of Hirsutella sinensis infecting Hepialidae insect larvae, whose fruiting body is also the main fungal structure used for taxonomic identification. However, the induction of fruiting body is still inefficient and the high cost resulting in the large-scale artificial cultivation of this fungus has been unsuccessful in China.In this study,important factors and target genes associated with the fruiting body induction during the development of O. more...

Organism:

Ophiocordyceps sinensis

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL29325

9 Samples

Download data: TXT

(Submitter supplied) Ophiocordyceps sinensis (Berk.) Sacc., a complex of larval carcass (sclerotium) and stroma formed by the fungus of Hirsutella sinensis infecting Hepialidae insect larvae, whose fruiting body is also the main fungal structure used for taxonomic identification. However, the induction of fruiting body is still inefficient and the high cost resulting in the large-scale artificial cultivation of this fungus has been unsuccessful in China.In this study,important factors and target genes associated with the fruiting body induction during the development of O. more...

Organism:

Ophiocordyceps sinensis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29325

9 Samples

Download data: FA, TXT

(Submitter supplied) The RNA-Seq technique was used to investigate the differentially transcribed genes of the caterpillar fungus Cordyces militaris. It was calculated that >63% of total annotated genes were expressed, including >55% of putative pathogen-host interaction genes. Overall, the fruiting-body development and mycelium growth by C. militaris activated high expression levels of genes in association with translation and post-translational modifications. more...

Organism:

Cordyceps militaris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL13293

4 Samples

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(Submitter supplied) Large scale assessment of the transcriptomes of the vegetative mycelium and primordium will facilitate the generation of a more comprehensive picture of the fruiting process in basidiomycetes. We coupled 5'-Serial Analysis of Gene Expression (5'-SAGE) to high-throughput pyrosequencing from 454 Life Sciences to analyze the transcriptomes and identify up-regulated genes (URGs) among vegetative mycelium (Myc) and stage 1 primordium (S1-Pri) of Coprinopsis cinerea during fruiting body development. more...

Organism:

Coprinopsis cinerea

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16031

2 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Fusarium graminearum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24502 GPL24501

36 Samples

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(Submitter supplied) Long noncoding RNA (lncRNA) plays important roles in morphological differentiation and development in eukaryotes. In filamentous fungi, however, little is known about lncRNAs and their roles in sexual development. Here we describe sexual stage-induced lncRNAs during the formation of perithecium, the sexual fruiting body of Fusarium graminearum. We identified 547 lncRNAs whose expression were developmental stage-specific; about 40% of them peaked during ascus development, when meiosis occurs. more...

Organism:

Fusarium graminearum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24502 GPL24501

24 Samples

Download data: GTF, TAB

(Submitter supplied) Long noncoding RNA (lncRNA) plays important roles in morphological differentiation and development in eukaryotes. In filamentous fungi, however, little is known about lncRNAs and their roles in sexual development. Here we describe sexual stage-induced lncRNAs during the formation of perithecium, the sexual fruiting body of Fusarium graminearum. We identified 547 lncRNAs whose expression were developmental stage-specific; about 40% of them peaked during ascus development, when meiosis occurs. more...

Organism:

Fusarium graminearum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24501

12 Samples

Download data: GTF, TAB

(Submitter supplied) The aim of this analysis was to analyze gene expression in young fruiting bodies (protoapothecia) of the filamentous ascomycete Ascodesmis nigricans. Young fruiting bodies were isolated by laser microdissection, RNA was extracted, amplified and used for RNA-sequencing. The resulting data were compared to data from total vegetative and sexual mycelium.

Organism:

Ascodesmis nigricans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22786

6 Samples

Download data: TXT

(Submitter supplied) Chaetomium globosum  is a model of conditional pathogens abundant on a wide variety of substrates in soil, water, and atmosphere environments. Homothallic C. globosum produces hairy perithecia bearing meiotic ascospores that are resistant to harsh conditions for dispersal, and asexual reproduction of conidia has never been observed. RNAs were samples from nine distinct morphological stages during the nearly synchronic perithecial development for C. more...

Organism:

Chaetomium globosum CBS 148.51

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26665

22 Samples

Download data: XLSX

(Submitter supplied) Fusarium graminearum and F. verticillioides are devastating cereal pathogens with very different life history and ecological characteristics. F. graminearum is homothallic, and sexual spores are an important component of its life cycle, responsible for disease initiation. F. verticilloides is heterothallic, and produces only modest numbers of fruiting bodies, which are not a significant source of inoculum. more...

Organism:

Fusarium graminearum; Fusarium verticillioides

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19247 GPL19248

12 Samples

Download data: TXT

(Submitter supplied) Fungi exhibit a huge diversity in morphology and ecology, and genetic basis of morphological development in sexual reproduction of multi-cellular fungi has not been fully investigated with genome-wide approaches. Model organism Neurospora crassa is the very first sequenced genome for multi-cellular fungi, and well-annotated genome and gene markers characterized for key morphological traits make N. crassa an ideal platform to investigate transcriptome and its regulation during sexual development. more...

Organism:

Neurospora crassa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16164

16 Samples

Download data: TXT

(Submitter supplied) The aim of this analysis was to analyze gene expression in developing fruiting bodies (perithecia) of the filamentous ascomycete Sordaria macrospora, and to identify genes that are differentially regulated in the three developmental mutants delta-spt3, delta-asm2, and delta-asm3.

Organism:

Sordaria macrospora

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27893

14 Samples

Download data: TXT

(Submitter supplied) Fusarium neocosmosporiellum (formerly Neocosmospora vasinfecta) has been reported as a fruit- and root-rot pathogen of numerous field crops, although it is not known to cause significant losses on any crop. This cosmopolitan species has also been reported as an opportunistic human pathogen, from infected soybean cyst nematodes, deer dung, and soil, and it possesses a highly active CO2 fixation mechanism. more...

Organism:

Fusarium graminearum; Fusarium neocosmosporiellum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25997 GPL24501

43 Samples

Download data: GFF, TAB

(Submitter supplied) Fungal fruiting body size and form are influenced by the ecology of the species, including diverse environmental stimuli. Accordingly, nutritional resources available to the fungus during development can be vital to successful production of fruiting bodies. To investigate the effect of nutrition, perithecial development of N. crassa was induced on two different media, a sparsely nutritive Synthetic Crossing Medium (SCM) and a natural Carrot Agar (CA). more...

Organism:

Neurospora crassa

Type:

Expression profiling by array

Platform:

GPL10640

48 Samples

Download data: GPR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Neurospora discreta; Neurospora tetrasperma

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19063 GPL19062

16 Samples

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(Submitter supplied) Many fungi form complex three-dimensional fruiting bodies, within which the meiotic machinery for sexual spore production has been considered to be largely conserved over evolutionary time. Indeed, much of what we know about meiosis in plant and animal taxa has been deeply informed by studies of meiosis in Saccharomyces and Neurospora. Nevertheless, the genetic basis of fruiting body development and its regulation in relation to meiosis in fungi is barely known, even within the best studied multicellular fungal model Neurospora crassa. more...

Organism:

Neurospora tetrasperma

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19063

8 Samples

Download data: TXT

(Submitter supplied) Many fungi form complex three-dimensional fruiting bodies, within which the meiotic machinery for sexual spore production has been considered to be largely conserved over evolutionary time. Indeed, much of what we know about meiosis in plant and animal taxa has been deeply informed by studies of meiosis in Saccharomyces and Neurospora. Nevertheless, the genetic basis of fruiting body development and its regulation in relation to meiosis in fungi is barely known, even within the best studied multicellular fungal model Neurospora crassa. more...

Organism:

Neurospora discreta

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19062

8 Samples

Download data: TXT

(Submitter supplied) The aim of this analysis was to analyze DNA methylation in the wild type and the histone chaperone mutant asf1 of the filamentous fungus Sordaria macrospora.

Organism:

Sordaria macrospora

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL14881

4 Samples

Download data: TXT