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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
11 RP11-412M16 C 11p15.5(FHCRC)
 chr11 0Mb AC093486.1 RH27310 AQ547135.1 SP6  
11 RP11-645I8 CR 11p15.4b(NCI)
11p15.5(FHCRC)
 chr11 6Mb AC021935.3 SHGC-2070, AFM248XF9 AQ402154.1 T7,
AQ400689.1*u SP6		  
11 CTB-43D9 R 11p15.5~15.4(CSMC)
 chr11 8Mb   IB665    
11 RP11-120E20 CR 11p15.4~15.5(FHCRC)
11p15.4d~15.5a(NCI)
 chr11 3Mb AC060812.15,
AC136364.1		 SHGC-20653 AQ349931.1 T7,
AQ349928.1 SP6		  
11 RP11-209M9 C 11p15.4~15.5(FHCRC)
 chr11 4Mb   SHGC-14668    
11 RP11-93A12 C 11p15.4~15.5(FHCRC)
 chr11 6Mb   SHGC-10293 AQ322603.1 SP6  
11 RP11-47D7 C 11p15(FHCRC)
 chr11 11Mb   SHGC-20657, SHGC-2092 AQ200362.1 ,
AQ200365.1 		 
11 RP11-89P14 C 11p14.3~15(FHCRC)
 chr11 18Mb   SHGC-32644 AQ286739.1 T7,
AQ286737.1*u SP6		  
11 RP11-107C21 C 11p14~15(FHCRC)
 chr11 18Mb AC084117.6 AA489611 AQ319672.1 SP6,
AQ319673.1 T7		  
11 RP11-140J4 C 11p14~15(FHCRC)
 chr11 19Mb   SHGC-33456, SHGC-5325, SHGC-972, SHGC-32644*u, SHGC-220*u AQ384084.1 T7,
AQ384083.1 SP6		  
11 RP11-6K5 C 11p14~15(FHCRC)
 chr11 20Mb AC025972.6 AA148230    
11 RP11-100N3 CR 11p15.5(FHCRC)
11q11b~11c(NCI)
 chr11 56Mb AC090924.3,
AP001803.4		 SHGC-2100, AFM344ZG1 AQ344866.1 SP6,
AQ323218.1 T7		  
11 RP11-133H19 C 11p15.4(FHCRC)
 chr11 8Mb   SHGC-13399 AQ385546.1 T7,
AQ350249.1 SP6		  
11 RP11-149K16 C 11p15.4(FHCRC)
 chr11 6Mb   SHGC-2070    
11 RP11-152H18 C 11p15.4(FHCRC)
 chr11 8Mb AC026853.4,
AC091053.11		 AA446290 AQ385182.1 SP6  
11 RP11-170F20 C 11p15.4(FHCRC)
 chr11 10Mb   AFM269ZA5, SHGC-2075 AZ519258.1 T7,
AQ413127.1 SP6		  
11 RP11-205O15 C 11p15.4(FHCRC)
 chr11 7Mb   SHGC-2077    
11 RP11-215H5 C 11p15.4(FHCRC)
 chr18 21Mb AC021788.5 AA682438    
11 RP11-25D22 C 11p15.4(FHCRC)
 chr11 7Mb AC016008.3*u SHGC-30914 AQ013610.1 ,
B83190.1*u T7		  
11 RP11-290F24 C 11p15.4(FHCRC)
 chr11 6Mb AC022762.8 SHGC-2070, AFM248XF9    
11 RP11-30I3 C 11p15.4(FHCRC)
 chr11 6Mb AC016441.5*u SHGC-10293 B85175.1 T7,
B85174.1 SP6		  
11 RP11-57F14 C 11p15.4(FHCRC)
 chr11 5Mb   SHGC-10494 AQ194837.1 ,
AQ115460.1 		 
11 RP11-82L24 C 11p15.4(FHCRC)
 chr11 11Mb   SHGC-20657    
11 RP11-98L18 C 11p15.4(FHCRC)
 chr11 6Mb   SHGC-2070, AFM248XF9 AQ320438.1 SP6,
AQ320443.1 T7		  
11 CTB-1L10 R 11p15.4~15.3(CSMC)
       WI-8661*u    
11 RP11-171N15 C 11p15.3~15.4(FHCRC)
 chr11 121Mb AC019303.3*u AFM302XB9, AFM302XB9*u AQ422628.1*u SP6  
11 RP11-28I11 C 11p15.3~15.4(FHCRC)
       SHGC-545*u    
11 RP11-33H21 C 11p15.2~15.4(FHCRC)
 chr11 9Mb   AFMB285XH9    
11 CTB-8P2 R 11p15.3(CSMC)
 chr11 8Mb   IB665    
11 RP11-206L19 R 11p15.2~15.3(FHCRC)
11p15.3c(NCI)
 chr11 11Mb AC019317.9 SHGC-2092    
11 RP11-245K9 C 11p15.2~15.3(FHCRC)
 chr11 12Mb   SHGC-2066, SHGC-17514*u, SHGC-2066*u AQ487488.1 SP6  
11 RP11-39F19 C 11p15.2~15.3(FHCRC)
 chr11 14Mb AC103733.1*u SHGC-13168 AQ029429.1 T7,
AQ029427.1 SP6		  
11 CTB-48I10 R 11p15.3~15.1(CSMC)
 chr11 11Mb   EST133916, IB568    
11 RP11-156A13 C 11p15.2(FHCRC)
 chr11 11Mb   SHGC-20657, SHGC-2092, AFM323WF5 AQ386937.1*d SP6,
AQ386939.1*d T7		 multiple_placements_on_genome
11 RP11-156A13 C 11p15.2(FHCRC)
 chr7 67Mb   AFM323WF5*d, SHGC-2092*d, SHGC-20657*d AQ386937.1 SP6,
AQ386939.1 T7		 multiple_placements_on_genome
11 RP11-170H2 C 11p15.2(FHCRC)
 chr11 12Mb AC100864.2*u SHGC-2066, SHGC-2066*u AQ413134.1 SP6,
AZ519264.1 T7		  
11 RP11-21L19 C 11p15.2(FHCRC)
 chr11 14Mb AC011084.17 SHGC-2059, AFM166ZE1 B86016.1 SP6  
11 RP11-72L17 C 11p15.2(FHCRC)
 chr11 14Mb   SHGC-13819 AQ266297.1 SP6  
11 RP11-79N15 C 11p15.2(FHCRC)
 chr11 15Mb AC103997.2*u SHGC-6000 AQ285084.1 T7,
AQ285081.1 SP6		  
11 RP11-7O20 C 11p15.2(FHCRC)
 chr11 14Mb AC025730.6,
AC090835.7		 SHGC-12316 B72260.1 SP6  
11 RP11-91I5 C 11p15.2(FHCRC)
 chr11 14Mb   SHGC-12316 AQ281432.1 SP6,
AQ281435.1 T7		  
11 RP11-98J9 CR 11p15.2(FHCRC)
11p15.2c(NCI)
 chr11 13Mb AC027779.10 D11S1348, AFM323VC1 AQ318159.1 SP6,
AQ318162.1 T7		  
11 RP11-13O19 C 11p15.1~15.2(FHCRC)
 chr11 19Mb   SHGC-5990 AZ521183.1 SP6,
B73295.1 T7		  
11 CTB-16P4 R 11p15.1(CSMC)
 chr11 8Mb   IB665    
11 CTB-2P10 R 11p15.1(CSMC)
 chr11 8Mb   D11S932    
11 CTB-41B1 R 11p15.1(CSMC)
 chr11 17Mb   AFM212XA11, AFMB340WF5, AFM212XA11*u, D11S921*u    
11 CTB-45D5 R 11p15.1(CSMC)
 chr11 14Mb   AFMB341YE5    
11 CTB-48G20 R 11p15.1(CSMC)
 chr11 22Mb   D11S1359    
11 CTB-55L11 R 11p15.1(CSMC)
 chr11 13Mb   D11S1348    
11 RP11-166E15 C 11p15.1(FHCRC)
 chr11 17Mb AC113136.1 SHGC-3156*u AQ382997.1 T7,
AQ382995.1 SP6		  
11 RP11-199K11 C 11p15.1(FHCRC)
 chr11 19Mb   AFM022TH2, SHGC-94*u    
11 RP11-23E5 C 11p15.1(FHCRC)
 chr11 17Mb   AFM200ZF10, AFM200ZF10*u B84301.1 SP6  
11 RP11-56J22 C 11p15.1(FHCRC)
 chr11 20Mb   SHGC-20660 AQ115266.1 ,
AQ082035.1 		 
11 RP11-62G18 C 11p15.1(FHCRC)
 chr11 19Mb   AFM189XC1, SHGC-31021, AFM189XC1*u AQ200699.1 ,
AQ200702.1 		 
11 RP11-81D23 C 11p15.1(FHCRC)
 chr11 18Mb AC107948.7 SHGC-32644 AZ521552.1 T7,
AQ318474.1 T7,
AZ521550.1 SP6		  
11 RP11-2C23 CR 11p14.3~15.1(FHCRC)
11p15.1c(NCI)
 chr11 19Mb AC015684.11 SHGC-33456, SHGC-5325, SHGC-972    
11 RP11-80B10 C 11p14.3~15.1(FHCRC)
 chr11 19Mb   SHGC-17502, AFM022TH2, AFM022TH2*u AQ283237.1 SP6,
AQ283239.1 T7		  
11 RP11-11A11 C 11p14~15.1(FHCRC)
 chr11 19Mb AC011227.7 SHGC-33456 B73053.1 T7,
B73052.1 SP6		  
11 CTB-1K11 R 11p14(CSMC)
 chr11 26Mb   AFM238XE5    
11 RP11-15A11 C 11p14(FHCRC)
 chr11 23Mb   SHGC-14451    
11 RP11-16H3 C 11p14(FHCRC)
 chr11 26Mb AC018399.4*u SHGC-220, AFM081ZA5 B82509.1 SP6,
B81741.1 T7		  
11 RP11-1L12 CR 11p14(FHCRC)
11p14.2a(NCI)
 chr11 27Mb AC015756.18 SHGC-17501 B63555.1 SP6,
B48419.1 SP6,
B63238.1 T7		  
11 RP11-203L7 C 11p14(FHCRC)
 chr11 26Mb   SHGC-9998    
11 RP11-215H22 C 11p14(FHCRC)
 chr11 29Mb AC021233.9 AFMB314WH1    
11 RP11-230G20 C 11p14(FHCRC)
 chr11 25Mb   AFMB332XF5    
11 RP11-275C6 C 11p14(FHCRC)
 chr11 29Mb   SHGC-20664    
11 RP11-68E12 C 11p14(FHCRC)
 chr7 120Mb   SHGC-3647 AQ284780.1 SP6,
AQ267291.1*u T7		  
11 RP11-11N17 C 11p13~14(FHCRC)
 chr11 28Mb   AFM079ZD3, AFM079ZD3*u B75652.1 SP6,
B75653.1 T7		  
11 RP11-215F2 C 11p13~14(FHCRC)
 chr11 31Mb   SHGC-812    
11 RP11-236N9 C 11p13~14(FHCRC)
 chr11 29Mb   SHGC-20664 AQ480314.1 T7,
AQ480313.1 SP6		  
11 RP11-49K17 C 11p13~14(FHCRC)
 chr11 29Mb   SHGC-20664 AQ052922.1 ,
AQ052925.1 SP6		  
11 RP11-113M18 C 11p14.1(FHCRC)
 chr11 29Mb   AFMB314WH1 AQ372515.1 SP6,
AQ341786.1 T7		  
11 CTA-395H2 R 11p13(CSMC)
 chr11 37Mb   D11S4045    
11 RP11-102C11 C 11p13(FHCRC)
 chr11 33Mb   SHGC-9865 AQ322960.1 SP6,
AQ322963.1 T7		  
11 RP11-103P20 C 11p13(FHCRC)
 chr11 36Mb   SHGC-6634 AQ315430.1 T7,
AQ315427.1 SP6		  
11 RP11-127K23 C 11p13(FHCRC)
 chr11 33Mb   SHGC-3931, SHGC-20667    
11 RP11-145B20 C 11p13(FHCRC)
 chr11 35Mb   SHGC-527 AQ375188.1 T7  
11 RP11-147L8 C 11p13(FHCRC)
 chr11 30Mb   AFMB295YD1    
11 RP11-246J1 C 11p13(FHCRC)
 chr11 30Mb   AFMB295YD1 AQ479157.1 SP6  
11 RP11-283O4 C 11p13(FHCRC)
 chr11 33Mb   SHGC-2620    
11 RP11-3E12 C 11p13(FHCRC)
 chr11 34Mb   SHGC-221, AFM109YA1    
11 RP11-51J14 C 11p13(FHCRC)
 chr11 33Mb   SHGC-20667 AQ053675.1  
11 RP11-102N4 C 11p12~13(FHCRC)
 chr11 36Mb   SHGC-20671 AQ315489.1 SP6,
AQ315491.1 T7		  
11 RP11-128F16 C 11p12~13(FHCRC)
 chr11 36Mb   AFMC025YC5    
11 RP11-187A8 C 11p12~13(FHCRC)
 chr11 36Mb   SHGC-6028    
11 RP11-36H11 C 11p12~13(FHCRC)
 chr11 36Mb   SHGC-13372 AQ047085.1 T7,
AQ047079.1 SP6		  
11 RP11-90F13 C 11p12~13(FHCRC)
 chr11 34Mb   AFMA081TG5 AQ284229.1 SP6,
AZ518439.1 T7,
AQ284231.1 T7		  
11 RP11-114G6 C 11p12(FHCRC)
 chr11 40Mb   AFM270VB1, D11S1330, SHGC-8206 AQ346328.1 T7,
AQ346325.1 SP6		  
11 RP11-14K17 C 11p12(FHCRC)
 chr11 39Mb   SHGC-11643 B76296.1 T7,
B76295.1 SP6		  
11 RP11-18B9 C 11p12(FHCRC)
 chr11 40Mb   AFM270VB1, D11S1330 B81893.1 T7  
11 RP11-220C23 C 11p12(FHCRC)
 chr11 40Mb AC021824.7 SHGC-47    
11 RP11-34F8 C 11p12(FHCRC)
 chr11 40Mb   SHGC-47 AQ045600.1 ,
AZ516625.1 T7		  
11 RP11-72A10 CR 11p12(FHCRC)
11p12d(NCI)
 chr11 36Mb AC079073.7 SHGC-20671 AQ267094.1 SP6,
AQ267096.1 T7		  
11 CTB-49E13 R 11p12~11.2(CSMC)
 chr11 41Mb   AFMA067YC5    
11 RP11-102E22 C 11p11.2~12(FHCRC)
 chr11 44Mb   SHGC-13806 AQ312365.1 SP6,
AQ312368.1 T7		  
11 RP11-150D18 C 11p11.2~12(FHCRC)
 chr11 41Mb   SHGC-6202 AQ375500.1 T7,
AQ375499.1 SP6		  
11 RP11-18D13 C 11p11.2~12(FHCRC)
 chr11 42Mb   SHGC-20672 B82856.1*d T7 multiple_placements_on_genome
11 RP11-18D13 C 11p11.2~12(FHCRC)
 chr11 45Mb   SHGC-20672*d B82856.1 T7 multiple_placements_on_genome
11 RP11-79G4 C 11p11.2~12(FHCRC)
 chr11 41Mb   SHGC-14404 AQ581343.1 SP6,
AQ282644.1 SP6,
AZ519164.1 SP6,
AQ282647.1 T7,
AQ629609.1 T7		  
11 RP11-12C11 CR 11p11.2(FHCRC)
11p11.2d(NCI)
 chr11 44Mb AC023340.2, AC091011.1*u AFMA131XD5, SHGC-33775, AFMA131XD5*u, AFMA131XD5*u CL423242.1 SP6,
B75719.1 SP6,
CL423244.1 T7		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
11 RP11-12D19 C 11p11.2(FHCRC)
 chr11 43Mb   SHGC-11703 B75742.1 SP6,
B75743.1 T7		  
11 RP11-206I1 C 11p11.2(FHCRC)
 chr11 45Mb   SHGC-31737 AQ421505.1 SP6,
AQ421506.1 T7		  
11 RP11-222G13 C 11p11.2(FHCRC)
 chr11 48Mb AC027161.1*u SHGC-6636   multiple_placements_on_genome
11 RP11-222G13 C 11p11.2(FHCRC)
 chr11 51Mb AC027161.1*u SHGC-6636   multiple_placements_on_genome
11 RP11-249K1 C 11p11.2(FHCRC)
 chr11 44Mb   SHGC-13806    
11 RP11-255G5 C 11p11.2(FHCRC)
 chr11 44Mb AC068858.10 SHGC-33775    
11 RP11-29O22 C 11p11.2(FHCRC)
 chr11 46Mb   SHGC-30351, SHGC-9650 B87650.1 T7  
11 RP11-390K5 C 11p11.2(FHCRC)
 chr11 47Mb AC024045.4,
AC090589.9		 RH62654*u    
11 RP11-39G12 C 11p11.2(FHCRC)
 chr11 46Mb   SHGC-30351, SHGC-9650 AQ030035.1 T7,
AQ030032.1 SP6		  
11 RP11-56E13 C 11p11.2(FHCRC)
 chr11 47Mb   SHGC-17236, SHGC-15104 AQ082462.1 ,
AQ115165.1*u 		 
11 RP11-79O11 C 11p11.2(FHCRC)
 chr11 43Mb   SHGC-11703 AZ519130.1 SP6,
AQ317686.1 SP6,
AQ282338.1 T7		  
11 CTB-10G23 R 11p11(CSMC)
 chr11 42Mb   D11S1355    
11 CTD-2051G10 C 11p11.1~11.2(FHCRC)
 chr11 47Mb   Hs.81218    
11 RP11-125F14 C 11p11.1~11.2(FHCRC)
 chr11 47Mb AC019059.4,
AC090582.9		 AA282445 AQ344034.1 SP6,
AQ344036.1 T7		  
11 RP11-85A19 C 11p11.1~11.2(FHCRC)
 chr11 48Mb   SHGC-17236, SHGC-15104    
11 RP11-90G1 C 11p11.1~11.2(FHCRC)
 chr11 46Mb AC012054.3 AFMB354WC5*u AQ281563.1 SP6,
AZ517919.1 T7,
AQ281566.1 T7		  
11 RP11-217G11 C 11q11(FHCRC)
 chr11 56Mb   SHGC-9433    
11 RP11-135H8 C 11q11~12(FHCRC)
 chr11 56Mb   SHGC-2100 AQ381705.1 T7,
AQ381701.1 SP6		  
11 RP11-87N22 C 11q12.1(FHCRC)
 chr11 112Mb AC009466.17 AFMB293ZG5    
11 RP11-205I14 C 11q12(FHCRC)
 chr11 59Mb   SHGC-12512 AQ419900.1 T7,
AQ419899.1 SP6		  
11 RP11-35F11 C 11q12(FHCRC)
 chr11 62Mb   SHGC-37369, SHGC-37369*u AQ045307.1 ,
AQ045308.1*u 		 
11 RP11-5F17 C 11q12(FHCRC)
 chr11 61Mb AC025689.3,
AC087848.3		 AFMA356YG5    
11 RP11-77M17 C 11q12(FHCRC)
 chr11 57Mb AC009438.3 SHGC-11920, SHGC-11920*u AQ268897.1 SP6,
AQ268899.1 T7		  
11 CTB-22G14 R 11q12~13.1(CSMC)
 chr11 62Mb   AFMA085YC9    
11 CTB-7F20 R 11q12~13.1(CSMC)
 chr11 62Mb   AFMA085YC9    
11 RP11-568F15 C 11q12~13(FHCRC)
 chr11 59Mb AC021809.5 AFM284XD9    
11 RP11-660B16 CR 11q12.3b(NCI)
11q12~13(FHCRC)
 chr11 62Mb AC073228.2 AFM039XG3 AQ611477.1 T7,
AQ611528.1 SP6		  
11 RP11-9K14 C 11q12~13(FHCRC)
 chr11 65Mb   SHGC-1364 B72596.1 T7  
11 RP11-75H24 C 11q12.3(FHCRC)
 chr11 58Mb   SHGC-34857 AQ266733.1 T7  
11 RP11-49D19 C 11q13.1~13.2(FHCRC)
 chr11 62Mb   SHGC-30229 AQ052920.1 ,
AQ052923.1 		 
11 CTB-40A16 R 11q13(CSMC)
 chr11 65Mb   IB3011    
11 CTD-2029L11 C 11q13(FHCRC)
       Hs.99491*u    
11 RP11-139E16 C 11q13(FHCRC)
 chr4 152Mb   SHGC4-728 AQ382690.1 SP6,
AQ382695.1 T7		  
11 RP11-149G19 C 11q13(FHCRC)
 chr11 67Mb AC051652.2 AFM289YA9 AQ377019.1 SP6,
AQ377032.1 T7		  
11 RP11-15L8 C 11q13(FHCRC)
 chr11 66Mb AC018798.7,
AP003176.2		 SHGC-7373 B75370.1 SP6  
11 RP11-169D4 C 11q13(FHCRC)
 chr11 71Mb AC026173.3,
AP005019.1		 SHGC-3230    
11 RP11-256P19 C 11q13(FHCRC)
 chr11 71Mb   SHGC-11839, SHGC-11839*u    
11 RP11-527H7 C 11q13(FHCRC)
 chr11 66Mb AC019220.3 ACTN3    
11 RP11-548G17 C 11q13(FHCRC)
 chr11 64Mb AC055871.3 SHGC-11397    
11 RP11-675B4 C 11q13(FHCRC)
 chr11 65Mb AP000822.3 D11S913 AQ518483.1 SP6  
11 RP11-119C13 C 11q13~14(FHCRC)
 chr11 75Mb   SHGC-36303    
11 RP11-31F2 C 11q13~14(FHCRC)
 chr11 77Mb   SHGC-10777 AQ046127.1 ,
AQ046128.1*u 		 
11 RP11-98G24 C 11q13~14(FHCRC)
 chr11 76Mb   SHGC-31540 AQ317594.1 T7  
11 RP11-20K4 CR 11q13.2a~13.2b(NCI)
11q13.4(FHCRC)
 chr11 63Mb AC021987.3*d SHGC-9670, SHGC-34148*d, SHGC-14407*u CL423278.1*d T7,
B83851.1*d T7,
CL423276.1*u SP6		 multiple_placements_on_genome
11 RP11-20K4 CR 11q13.2a~13.2b(NCI)
11q13.4(FHCRC)
 chr11 67Mb AC021987.3 SHGC-34148, SHGC-9670*d, SHGC-14407*u CL423278.1 T7,
B83851.1 T7,
CL423276.1*u SP6		 multiple_placements_on_genome
11 CTB-41I21 R 11q13.3(CSMC)
 chr11 65Mb   D11S913    
11 CTB-55I7 R 11q13.3~13.4(CSMC)
 chr11 68Mb   AFMA190XD9    
11 RP11-160L9 C 11q13.3~13.4(FHCRC)
 chr11 67Mb   SHGC-34148 AQ377413.1 T7  
11 RP11-102M18 C 11q13.4(FHCRC)
 chr11 73Mb   SHGC-530 AQ313276.1 T7,
AQ313273.1 SP6		  
11 RP11-120P20 C 11q13.4(FHCRC)
 chr11 70Mb   SHGC-4518    
11 RP11-165C10 C 11q13.4(FHCRC)
 chr11 75Mb   SHGC-32865 AQ381503.1 SP6,
AQ381505.1 T7		  
11 RP11-168B13 C 11q13.4(FHCRC)
 chr11 74Mb   SHGC-4824 AQ421364.1 SP6,
AZ517649.1 T7,
AQ421365.1 T7		  
11 RP11-44J5 CR 11q13.4(FHCRC)
11q13.4a~13.4b(NCI)
 chr11 72Mb AC011077.4 AFMC020YD5 AQ199008.1 ,
AQ199009.1 		 
11 RP11-456I15 C 11q13.4(FHCRC)
 chr11 72Mb AP002993.3 AFM185YA1 AQ582715.1 SP6  
11 RP11-51M9 C 11q13.4(FHCRC)
 chr11 71Mb   SHGC-3230 AQ052678.1  
11 RP11-8D13 C 11q13.4(FHCRC)
 chr11 70Mb   SHGC-15099 B72306.1 SP6  
11 RP11-96D22 C 11q13.4(FHCRC)
 chr11 72Mb   SHGC-33836 AQ314886.1 SP6,
AQ314889.1 T7		  
11 RP11-672A2 C 11q13.4~13.5(FHCRC)
 chr11 75Mb AP001189.5 GARP AQ464055.1*u T7,
AQ610115.1*u SP6		  
11 CTB-60G18 R 11q13.5(CSMC)
       D11S906*u    
11 RP11-91P18 C 11q13.5(FHCRC)
 chr11 74Mb   SHGC-4824, SHGC-10323 AQ286152.1 SP6  
11 CTB-5M14 R 11q13.5~14.1(CSMC)
 chr11 78Mb   D11S4172    
11 RP11-115O9 C 11q13.5~14.1(FHCRC)
 chr11 76Mb AC023915.2 AFMB359WH1 AQ344562.1 SP6,
AQ344564.1 T7		  
11 RP11-32D14 C 11q13.5~14.1(FHCRC)
 chr11 78Mb   SHGC-2095    
11 CTB-55G10 R 11q14.1(CSMC)
 chr11 83Mb   AFM337TC5    
11 CTB-5G16 R 11q14.1(CSMC)
 chr11 78Mb   D11S4172    
11 CTB-5M8 R 11q14.1(CSMC)
 chr11 78Mb   D11S4172    
11 RP11-19P3 C 11q14.1(FHCRC)
 chr11 84Mb AC019020.4 AFM338XE1, AFM338XE1*u B88382.1 SP6,
B92157.1 T7		  
11 RP11-1E8 CR 11q14.1(FHCRC)
11q14.1c(NCI)
 chr11 81Mb AC021245.2 SHGC-219, D11S901 B47679.1 T7,
AQ312928.1 SP6		  
11 RP11-215H8 C 11q14.1(FHCRC)
 chr11 78Mb   SHGC-30999    
11 RP11-275O16 C 11q14.1(FHCRC)
       SHGC-20690*u    
11 RP11-7H7 CR 11q14.1(FHCRC)
11q14.1a(NCI)
 chr11 78Mb AP002412.1 SHGC-12273 B71312.1 SP6,
AZ520008.1 T7		  
11 CTB-48B4 R 11q14(CSMC)
 chr11 81Mb   D11S901    
11 RP11-102K15 C 11q14(FHCRC)
 chr11 83Mb   SHGC-8474, SHGC-13230 AQ311624.1 T7,
AQ311622.1 SP6		  
11 RP11-103I15 C 11q14(FHCRC)
 chr11 85Mb   SHGC-24065, SHGC-35169 AQ323782.1 T7  
11 RP11-342A16 C 11q14(FHCRC)
 chr11 83Mb AC067758.2 AFM311WH5*u    
11 RP11-34L12 C 11q14(FHCRC)
 chr11 82Mb   SHGC-2107 AZ517153.1 T7,
AQ045660.1 		 
11 RP11-40G3 C 11q14(FHCRC)
 chr11 83Mb   SHGC-8474 AQ029643.1 ,
AZ517457.1*u T7		  
11 RP11-254C5 CR 11q14.1~14.2(FHCRC)
11q24.3a(NCI)
 chr11 127Mb AP001829.4 AFM324ZH9, SHGC-2094 AQ478282.1 T7,
AQ478281.1 SP6		  
11 RP11-118L16 R 11q14.1d(NCI)
 chr11 83Mb AC018708.5 SHGC-8474 AQ349776.1 SP6,
AQ349778.1 T7		  
11 RP11-131C11 CR 11q14.1e(NCI)
11q14.2(FHCRC)
 chr11 84Mb AC011768.4 SHGC-36010    
11 RP11-119M23 C 11q14.2~14.3(FHCRC)
 chr11 85Mb   SHGC-24065    
11 RP11-89H11 C 11q14.2~14.3(FHCRC)
 chr11 86Mb   SHGC-35131 AZ517771.1 T7,
AQ284711.1 T7,
AQ284709.1 SP6		  
11 RP11-30C9 C 11q14.3(FHCRC)
 chr11 89Mb   SHGC-981 B85106.1 SP6,
B85107.1 T7		  
11 RP11-13L14 C 11q21(FHCRC)
 chr11 95Mb AC016860.2 SHGC-9649, SHGC-32290 B76124.1 SP6,
B76125.1 T7		  
11 RP11-15J1 C 11q21(FHCRC)
 chr11 93Mb   SHGC-35949, SHGC-9821 B75345.1 SP6  
11 RP11-163O18 C 11q21(FHCRC)
 chr11 92Mb   SHGC-2063 AQ379413.1 SP6,
AQ379415.1 T7		  
11 RP11-16K5 CR 11q21(FHCRC)
11q21c~21d(NCI)
 chr11 95Mb AC011875.3 AFM203VG7, SHGC-13733, AFM203VG7*u B75493.1 T7,
B75492.1 SP6		  
11 RP11-184G18 C 11q21(FHCRC)
 chr11 94Mb   SHGC-33693    
11 RP11-217E8 C 11q21(FHCRC)
 chr11 93Mb   SHGC-35949, SHGC-9821    
11 RP11-56F12 C 11q21(FHCRC)
 chr11 93Mb   SHGC-20695 AQ081992.1 ,
AQ116001.1 		 
11 RP11-685N10 R 11q21(UCSF)
11q21c(NCI)
 chr11 93Mb AP000786.4 SHGC-35949 CL423339.1 SP6,
CL423342.1 T7		  
11 RP11-97D3 C 11q21~22(FHCRC)
 chr11 95Mb   SHGC-9649, SHGC-32290 AQ318591.1 T7  
11 CTB-8C6 R 11q22.1(CSMC)
 chr11 104Mb   AFM347TE5    
11 RP11-258C1 C 11q22.1(FHCRC)
 chr11 99Mb   SHGC-2068 AQ482884.1 SP6,
AQ482885.1 T7		  
11 RP11-40B14 C 11q22.1(FHCRC)
 chr11 99Mb AC026851.3 AFM218YA7, AFM218YA7*u    
11 RP11-5G24 C 11q22.1(FHCRC)
 chr11 101Mb   SHGC-10856    
11 RP11-90M3 11q22.1(FHCRC)
 chr11 101Mb   SHGC-2082, SHGC-2458 AQ283721.1 SP6,
AQ283725.1 T7,
AZ517939.1 T7		  
11 CTB-55B15 R 11q22(CSMC)
 chr11 106Mb   AFMA115ZC1, AFM296YD9, AFMA152WH9, AFM296YD9*u    
11 RP11-111A13 C 11q22(FHCRC)
 chr11 101Mb   SHGC-2082, SHGC-2458 AQ321039.1 SP6,
AQ321041.1 T7		  
11 RP11-134G19 C 11q22(FHCRC)
 chr11 101Mb   SHGC-2082 AQ386232.1 T7,
AQ386231.1*u SP6		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
11 RP11-179B7 CR 11q22(FHCRC)
11q22.3a(NCI)
 chr11 103Mb AC024030.2,
AP003083.2		 SHGC-17520*u AQ418262.1 SP6,
AQ418264.1 T7		  
11 RP11-267L1 C 11q22(FHCRC)
 chr11 97Mb   SHGC-4809 AQ488835.1 SP6,
AQ488837.1*u T7		  
11 RP11-276O11 C 11q22(FHCRC)
 chr11 105Mb   SHGC-12291 AQ504865.1*u T7  
11 RP11-51M23 C 11q22(FHCRC)
 chr11 104Mb   SHGC-13429 AQ053432.1  
11 RP11-750P5 R 11q22(UCSF)
11q22.2a(NCI)
 chr11 102Mb AP000922.2 SHGC-11954 CL423205.1 SP6,
CL423209.1*u T7		  
11 RP11-770N16 R 11q22(UCSF)
 chr11 102Mb AP000875.2 sts-X75308, SHGC-8453 AQ453495.1*u SP6  
11 RP11-100J10 C 11q22~23(FHCRC)
 chr11 112Mb AP001802.3 AFMB293ZG5 AQ311642.1 T7,
AQ345633.1 SP6		  
11 RP11-10C3 C 11q22~23(FHCRC)
 chr11 109Mb   SHGC-14914, SHGC-34524    
11 RP11-209E9 C 11q22~23(FHCRC)
 chr11 107Mb AC025197.2 SHGC-14706    
11 RP11-255P19 C 11q22~23(FHCRC)
 chr11 113Mb   SHGC-37362    
11 RP11-85F4 C 11q22~23(FHCRC)
 chr11 105Mb   SHGC-2071 AQ282998.1 SP6  
11 RP11-89O8 C 11q22~23(FHCRC)
 chr11 109Mb   SHGC-9808 AZ517701.1 T7,
AQ283557.1 T7,
AZ517698.1 SP6,
AQ283554.1 SP6		 multiple_placements_on_genome
11 RP11-89O8 C 11q22~23(FHCRC)
 chrY 57Mb   SHGC-9808*d AZ517701.1 T7,
AQ283557.1 T7,
AQ283554.1*d SP6,
AZ517698.1*d SP6		 multiple_placements_on_genome
11 RP11-97J23 C 11q22~23(FHCRC)
 chr11 109Mb   SHGC-34524 AQ319409.1 T7,
AQ319406.1*u SP6		  
11 CTD-2039C11 C 11q22.2(FHCRC)
 chr11 101Mb   Hs.127799    
11 CTB-12N1 R 11q22.3(CSMC)
 chr11 109Mb   AFMA102XF9    
11 RP11-163A13 C 11q22.3(FHCRC)
 chr11 111Mb   SHGC-30253 AQ377384.1 SP6  
11 RP11-2F21 C 11q22.3(FHCRC)
 chr11 109Mb AC015772.6*d SHGC-14914, SHGC-34524 B63605.1 T7,
B63604.1 SP6		 multiple_placements_on_genome
11 RP11-2F21 C 11q22.3(FHCRC)
 chr11 24Mb AC015772.6 SHGC-34524*d, SHGC-14914*d B63604.1*d SP6,
B63605.1*d T7		 multiple_placements_on_genome
11 RP11-33F6 C 11q22.3(FHCRC)
 chr11 102Mb   SHGC-8453 AQ044970.1  
11 RP11-49A9 C 11q22.3(FHCRC)
 chr11 109Mb   SHGC-9808 AQ052891.1 ,
AQ052895.1 		 
11 CTB-3K19 R 11q22.3~23.1(CSMC)
 chr11 111Mb   AFMA104YE1    
11 CTB-56I21 R 11q22.3~23.1(CSMC)
 chr11 111Mb   AFMA104YE1    
11 RP11-262J9 C 11q22.3~23(FHCRC)
 chr11 111Mb   SHGC-31520 AQ490782.1 T7,
AQ490778.1 SP6		  
11 RP11-42L18 C 11q22.3~23(FHCRC)
 chr11 107Mb   SHGC-9652 AQ058918.1 ,
AQ115627.1 		 
11 RP11-56J3 R 11q22.3c(NCI)
 chr11 107Mb AC015692.3 SHGC-9652 AQ115883.1 ,
AQ081877.1 		 
11 CTA-821E12 R 11q23.1(CSMC)
 chr11 118Mb   D11S4378    
11 CTB-49P7 R 11q23.1(CSMC)
 chr11 110Mb   AFM312VC9    
11 RP11-3F7 CR 11q23.1(FHCRC)
11q23.1c(NCI)
 chr11 111Mb AC010815.6 SHGC-2090, AFM320XH1*u B63364.1 T7,
B63363.1 SP6		  
11 RP11-47N15 C 11q23.1~23.2(FHCRC)
 chr11 111Mb   SHGC-2090 AQ202803.1 ,
AQ202806.1 		 
11 RP11-112I9 C 11q23(FHCRC)
 chr11 118Mb   SHGC-37225, SHGC-2910, SHGC-37225*u AQ342725.1 T7,
AQ323806.1 SP6		  
11 RP11-113M2 C 11q23(FHCRC)
 chr11 113Mb   SHGC-10062, SHGC-36830 AQ372498.1 SP6  
11 RP11-126D18 C 11q23(FHCRC)
 chr11 120Mb   SHGC-34198, SHGC-36974 AQ348994.1 SP6,
AQ348996.1 T7		  
11 RP11-158I9 C 11q23(FHCRC)
 chr11 118Mb AP004609.1 SHGC-2910, SHGC-10796 AQ389896.1*u T7  
11 RP11-279M1 C 11q23(FHCRC)
 chr11 113Mb   SHGC-36830    
11 RP11-35P15 C 11q23(FHCRC)
 chr11 117Mb AP001554.6 SHGC-6010 AQ046017.1 ,
AQ046019.1 		 
11 RP11-45N4 C 11q23(FHCRC)
 chr11 117Mb   SHGC-37225, SHGC-37225*u AQ202198.1 ,
AQ202195.1 		 
11 RP11-8K10 CR 11q23(FHCRC)
11q23.3g(NCI)
 chr11 119Mb AC016849.3 SHGC-13646 B72374.1 SP6,
B72375.1 T7		  
11 RP11-145I11 C 11q23~24(FHCRC)
 chr11 121Mb   AFM302XB9 AZ516054.1 T7,
AQ372303.1 SP6		  
11 RP11-62A14 C 11q23~24(FHCRC)
 chr11 118Mb   SHGC-3645 AQ199909.1 ,
AQ199913.1 		 
11 RP11-87O12 C 11q23~24(FHCRC)
 chr11 122Mb   SHGC-2096 AQ284873.1 T7  
11 RP11-270N1 C 11q23.2(FHCRC)
 chr11 111Mb   SHGC-30253 AQ480745.1 SP6  
11 RP11-36M5 C 11q23.2(FHCRC)
 chr11 113Mb   SHGC-2073 AQ045443.1 ,
AQ045442.1 		 
11 RP11-5N6 C 11q23.2(FHCRC)
 chr11 112Mb   SHGC-37362 B69657.1 T7,
B48182.1 T7		  
11 RP11-94C16 C 11q23.2~23.3(FHCRC)
 chr6 123Mb   SHGC-20708*d AQ314368.1 SP6,
AQ314370.1 T7		 multiple_placements_on_genome
11 RP11-94C16 C 11q23.2~23.3(FHCRC)
 chr11 119Mb   SHGC-20708 AQ314368.1*d SP6,
AQ314370.1*d T7		 multiple_placements_on_genome
11 RP11-11C15 CR 11q23.2~23.3(FHCRC)
11q24.1b~24.1c(NCI)
 chr11 122Mb AC021981.2 SHGC-12982 B73074.1 SP6,
B73075.1 T7		  
11 CTB-49P14 R 11q23.3(CSMC)
 chr11 114Mb   AFM345XE9    
11 CTB-50N5 R 11q23.3(CSMC)
 chr11 79Mb   AFMB055YD1    
11 RP11-117K21 C 11q23.3~24(FHCRC)
 chr11 119Mb   SHGC-32316*u AQ348059.1 SP6,
AQ348061.1 T7		  
11 RP11-133I16 C 11q23.3~24(FHCRC)
 chr11 120Mb   SHGC-380 AZ521559.1 T7,
AQ384854.1 SP6		  
11 RP11-32A17 C 11q23.3~24(FHCRC)
 chr11 120Mb   SHGC-34198, SHGC-36974    
11 CTB-61J4 R 11q24(CSMC)
 chr11 10Mb   MR12349    
11 CTB-9A24 R 11q24(CSMC)
 chr11 118Mb   AFMA357WA5    
11 CTD-2080L19 C 11q24(FHCRC)
 chr11 128Mb   Hs.108043    
11 RP11-112M22 C 11q24(FHCRC)
 chr11 127Mb   SHGC-2094 AQ312360.1 T7  
11 RP11-15J15 C 11q24(FHCRC)
 chr11 125Mb AC011728.3 SHGC-1011, AFM248WF5 B76493.1 T7,
B76492.1 SP6		  
11 RP11-20M1 C 11q24(FHCRC)
 chr11 125Mb   SHGC-34972 AQ008127.1 SP6  
11 RP11-35M6 C 11q24(FHCRC)
 chr11 122Mb   RH51726 AQ045142.1  
11 RP11-41K5 C 11q24(FHCRC)
 chr11 126Mb AC027255.2*u SHGC-31257    
11 RP11-50B3 C 11q24(FHCRC)
 chr11 125Mb AP001893.5 SHGC-1011, AFM248WF5 AQ082452.1 ,
AQ082454.1*u 		 
11 RP11-55G19 C 11q24(FHCRC)
 chr11 131Mb   SHGC-248 AQ081699.1 T7,
AQ081694.1 		 
11 CTB-56H10 R 11q24~25(CSMC)
 chr11 122Mb   AFMA189YB1, AFM256ZA5    
11 RP11-77C9 R 11q25a(NCI)
 chr11 131Mb AP001811.2 SHGC-248 AQ268065.1 T7,
AQ268063.1 SP6		  
11 CTB-14O11 R 11q25(CSMC)
 chr11 128Mb   MR12634    
11 CTB-16I23 R 11q25(CSMC)
 chr11 128Mb   MR12634    
11 CTB-9J15 R 11q25(CSMC)
 chr11 127Mb   AFMA163TB5    
11 RP11-17M17 C 11q25(FHCRC)
 chr11 132Mb   SHGC-4808 B82786.1 SP6,
B82787.1 T7		  
11 RP11-27H17 C 11q25(FHCRC)
 chr11 133Mb   SHGC-34635 B83335.1 SP6  
11 RP11-7F12 C 11q25(FHCRC)
 chr11 131Mb AC113009.8, AC010786.4*u SHGC-248 B72022.1 T7,
B72021.1 SP6		  
11 RP11-15J5 R 11q25b(NCI)
 chr11 131Mb AC012234.6 SHGC-4808 B75352.1 T7,
B75351.1 SP6		  
total264C:215 R:68 S:0264259 79264164 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.