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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
13 CTB-54F23 R 13p11(CSMC)
 chr13 21Mb   AFMA128YC1    
13 CTB-55B13 R 13p11(CSMC)
 chr13 21Mb   AFMA128YC1    
13 RP11-144H23 RS 13q11~12.3(SC)
13q12.13c(NCI)
 chr13 26Mb AL158062.22 SHGC-6462 CL423297.1 T7,
AQ389551.1 T7,
CL423291.1 SP6		  
13 RP11-18F22 C 13q12.1(FHCRC)
 chr13 24Mb   SHGC-3690 B82870.1 T7  
13 RP11-204D11 C 13q12.1(FHCRC)
 chr13 24Mb   SHGC-7158 AQ417654.1 SP6,
AQ417657.1 T7		  
13 RP11-8C15 C 13q12.1(FHCRC)
 chr13 20Mb   SHGC-37580 B72296.1 SP6  
13 CTB-20D20 R 13q12(CSMC)
 chr13 33Mb   D13S267    
13 CTB-45G3 R 13q12(CSMC)
 chr13 19Mb   D13S175    
13 RP11-110K8 C 13q12(FHCRC)
 chr13 20Mb AL138680.15 SHGC-37580 AQ323940.1 T7,
AQ350181.1 SP6		  
13 RP11-128N17 C 13q12(FHCRC)
 chr13 24Mb   SHGC-36370    
13 RP11-31H2 C 13q12(FHCRC)
 chr13 23Mb AL157364.15 SHGC-12920 AQ046180.1  
13 RP11-35M5 C 13q12(FHCRC)
 chr13 27Mb   SHGC-9475 AQ046528.1 ,
AQ046529.1 		 
13 RP11-463M3 CS 13q12(FHCRC)
 chr13 20Mb AL139380.6 RH44200    
13 RP11-7G2 C 13q12(FHCRC)
 chr13 26Mb   SHGC-6462 B71295.1 T7  
13 RP11-80J14 C 13q12(FHCRC)
 chr13 24Mb AC016688.5 SHGC-12920, SHGC-7158 AQ317764.1 SP6,
AQ284125.1 T7		  
13 RP11-85P8 C 13q12(FHCRC)
 chr13 27Mb   SHGC-10653    
13 RP11-88J11 C 13q12(FHCRC)
 chr13 25Mb AL159159.21 R59697 AQ285988.1 T7  
13 RP11-89P22 C 13q12(FHCRC)
 chr13 27Mb   SHGC-9475 AQ286774.1 T7,
AQ286771.1*u SP6		  
13 RP11-125I23 C 13q12~13(FHCRC)
 chr13 26Mb AL137059.20 RH53406 AQ346779.1 T7,
AQ346776.1 SP6		  
13 RP11-87E7 C 13q12.2(FHCRC)
 chr13 22Mb   SHGC-37589, SHGC-37589*u    
13 CTA-393C11 R 13q12.2~12.3(CSMC)
       D13S1456*u, RP_L21*u    
13 RP11-63C16 C 13q12.3~13(FHCRC)
 chr13 30Mb   SHGC-11972, SHGC-2180 AQ201876.1  
13 RP11-64C21 C 13q12.3~13(FHCRC)
 chr13 30Mb   SHGC-2180 AQ238650.1 SP6  
13 RP11-89L15 CRS 13q12.3~14.12(SC)
13q13(FHCRC)
13q14.11a(NCI)
 chr13 39Mb AL133318.11 D13S1162 AQ284837.1 SP6,
AQ284840.1 T7		  
13 RP11-121O19 RS 13q12.3~14.3(SC)
13q12.3c(NCI)
 chr13 29Mb AL138681.17 SHGC-11972, SHGC-2180 AQ343487.1 SP6,
AQ343491.1 T7		  
13 RP11-53F19 C 13q13(FHCRC)
 chr13 39Mb   D13S1162 AQ053097.1 ,
AQ053096.1*u 		 
13 RP11-14A4 C 13q13~14.1(FHCRC)
 chr13 39Mb   SHGC-34363 B81624.1 SP6  
13 RP11-34K15 C 13q13~14.1(FHCRC)
 chr13 42Mb   SHGC-16187    
13 RP11-88N4 C 13q13~14.1(FHCRC)
 chr13 40Mb   SHGC-16596 AQ281528.1 SP6,
AZ516863.1 SP6,
AZ516866.1 T7,
AQ281531.1 T7		  
13 RP11-9F13 C 13q13~14.1(FHCRC)
 chr13 40Mb   SHGC-35896 B72536.1 T7,
B72535.1*u SP6		  
13 RP11-17I11 C 13q13~14(FHCRC)
 chr13 42Mb AC016270.4 SHGC-6450 B82714.1 T7,
B82713.1 SP6		  
13 RP11-2P5 C 13q13~14(FHCRC)
 chr13 40Mb AL157877.11 R99515    
13 CTB-14B8 R 13q14.1(CSMC)
 chr13 39Mb   AFMA337WB5    
13 CTB-53M12 R 13q14.1(CSMC)
 chr13 42Mb   AFMA110XC5    
13 CTA-543F8 R 13q14.1~14.2(CSMC)
 chr13 40Mb   D13S1162    
13 RP11-13I8 C 13q14(FHCRC)
 chr13 41Mb   SHGC-11502 B82219.1 SP6,
B75128.1 T7		  
13 RP11-165D7 C 13q14(FHCRC)
 chr13 47Mb AL157813.11 AA495766 AQ382284.1 T7,
AQ415289.1 SP6		  
13 RP11-20K19 C 13q14(FHCRC)
 chr13 44Mb   SHGC-11937, SHGC-194 AQ008123.1 SP6,
B83071.1 SP6,
B85704.1*u T7		  
13 RP11-21H9 CR 13q14(FHCRC)
13q14.11d(NCI)
 chr13 41Mb AC023297.3 SHGC-4151 B83994.1 T7,
B83993.1 SP6		  
13 RP11-30N18 C 13q14(FHCRC)
 chr13 44Mb   SHGC-8160 B87908.1 T7  
13 RP11-54G17 C 13q14(FHCRC)
 chr13 48Mb   SHGC-902 AQ082004.1  
13 RP11-211J11 C 13q14~21(FHCRC)
 chr13 51Mb   SHGC-6452   multiple_placements_on_genome
13 RP11-211J11 C 13q14~21(FHCRC)
 chr13 52Mb   SHGC-6452   multiple_placements_on_genome
13 RP11-34F20 C 13q14~21(FHCRC)
 chr13 49Mb AL137060.13 AA425755 AQ045609.1 ,
AZ516651.1 T7		  
13 RP11-120G8 C 13q14.2(FHCRC)
 chr13 47Mb   SHGC-16168 AQ350340.1 SP6,
AQ350341.1 T7		  
13 RP11-217H23 C 13q14.2(FHCRC)
 chr13 44Mb   SHGC-11937    
13 RP11-58C16 C 13q14.2(FHCRC)
 chr13 50Mb AL159157.3*u SHGC-33510 AQ202447.1  
13 RP11-64P12 S 13q14.2~21.2(SC)
 chr13 51Mb AL158066.12 SHGC-20819*u AQ237110.1 T7,
AQ237109.1 SP6		  
13 RP11-78J21 S 13q14.2~21.2(SC)
 chr13 51Mb AL137058.8 SHGC-20819    
13 CTB-13K20 R 13q14.3(CSMC)
 chr13 50Mb   D13S284    
13 CTB-48D24 R 13q14.3(CSMC)
 chr13 53Mb   D13S169    
13 RP11-16F6 C 13q14.3(FHCRC)
 chr13 52Mb AC012239.3 SHGC-20819 B81737.1 SP6,
B82497.1*u T7		  
13 RP11-52B21 C 13q14.3(FHCRC)
 chr13 46Mb   SHGC-3572 AQ115706.1 ,
AQ083125.1 		 
13 CTB-55D24 R 13q14.3~21.1(CSMC)
 chr13 51Mb   AFMA090WB9    
13 RP11-93H24 C 13q14.3~21.1(FHCRC)
 chr13 52Mb AL139089.13 SHGC-31236*u AQ312163.1 SP6,
AQ312594.1 T7		  
13 CTB-61M10 R 13q21.1(CSMC)
 chr13 59Mb   D13S176    
13 RP11-205J24 C 13q21.1(FHCRC)
 chr13 56Mb   SHGC-8760    
13 RP11-234M13 C 13q21.1(FHCRC)
 chr13 55Mb   SHGC-8467    
13 RP11-431O22 C 13q21.1(FHCRC)
 chr13 52Mb AL139085.13 RH53180 AQ547429.1 SP6,
AZ916640.1 SP6,
AQ547431.1 T7,
AZ916639.1 T7		  
13 CTB-43J4 R 13q21(CSMC)
 chr13 56Mb   AFMA065ZD1    
13 RP11-173B14 C 13q21~22(FHCRC)
 chr13 74Mb AL137244.28 SHGC-30014    
13 RP11-33P2 C 13q21~22(FHCRC)
 chr13 72Mb   SHGC-9424    
13 RP11-9P22 C 13q21~22(FHCRC)
 chr13 73Mb AC011050.4*u SHGC-2167 B72677.1 SP6,
B72678.1 T7		  
13 RP11-430I3 R 13q21.2b(NCI)
 chr13 59Mb AL356502.21 RH44715 AZ916637.1 T7,
AQ552415.1 T7,
AQ552413.1 SP6,
AZ916638.1 SP6		  
13 CTB-14C7 R 13q21.3(CSMC)
 chr13 67Mb   D13S276    
13 RP11-11C5 C 13q21.3(FHCRC)
 chr13 72Mb AL356754.18 SHGC-14953 B71838.1 SP6,
B71839.1 T7		  
13 RP11-205C23 C 13q21.3(FHCRC)
 chr13 72Mb   SHGC-8155 AQ419216.1 T7  
13 RP11-37I8 C 13q21.3(FHCRC)
 chr13 64Mb   SHGC-20821 AQ029890.1 SP6  
13 RP11-165L1 RS 13q21.31~22.2(SC)
13q22.1a(NCI)
 chr13 72Mb AL139181.6 SHGC-8155, SHGC-665 AQ415440.1 SP6,
AQ382553.1 T7		  
13 RP11-30C8 S 13q21.31~22.2(SC)
 chr13 72Mb AL138964.11 SHGC-9424 B85105.1 SP6  
13 RP11-122N18 C 13q21.3~22(FHCRC)
 chr13 77Mb   SHGC-12417 AQ345069.1 SP6,
AZ520312.1 T7		  
13 RP11-46L3 C 13q21.3~22(FHCRC)
 chr13 73Mb   SHGC-3408 AQ195363.1 ,
AQ195364.1 		 
13 RP11-79I4 C 13q21.3~22(FHCRC)
 chr13 73Mb   SHGC-4027 AQ283096.1 T7,
AQ629635.1 T7,
AZ519175.1 SP6,
AQ283095.1 SP6,
AQ581403.1 SP6		  
13 RP11-137M6 CS 13q21.33~22.3(SC)
13q22~31(FHCRC)
 chr13 76Mb AL137140.12 SHGC-6449 AQ381060.1 SP6,
AQ348407.1 T7		  
13 RP11-285H24 S 13q22.1~22.3(SC)
 chr13 73Mb AL139036.12 SHGC-4027    
13 RP11-31C6 C 13q22(FHCRC)
 chr13 72Mb   SHGC-13063    
13 RP11-43P9 C 13q22(FHCRC)
 chr13 75Mb   SHGC-30014 AQ202945.1 ,
AQ202946.1 		 
13 RP11-94F7 C 13q22(FHCRC)
 chr13 72Mb   SHGC-8155, SHGC-665 AQ315807.1 T7,
AQ282121.1 SP6		  
13 RP11-131J24 S 13q22.1~31.1(SC)
 chr13 78Mb AL139319.16 SHGC-14656    
13 RP11-480M10 S 13q22.1~31.1(SC)
 chr13 76Mb AL157767.14*d RH26160   multiple_placements_on_genome
13 RP11-480M10 S 13q22.1~31.1(SC)
 chr13 79Mb AL157767.14 RH26160*d   multiple_placements_on_genome
13 RP11-118K20 C 13q31.1(FHCRC)
 chr13 83Mb   SHGC-20831 AQ347731.1 SP6  
13 RP11-93G2 C 13q31.1(FHCRC)
 chr13 77Mb   SHGC-14656 AQ322654.1 SP6  
13 CTB-14P6 R 13q31(CSMC)
 chr13 78Mb   D13S160    
13 CTB-40F11 R 13q31(CSMC)
 chr13 74Mb   D13S162    
13 RP11-100A3 C 13q31(FHCRC)
 chr13 93Mb   SHGC-11720 AQ319422.1 SP6,
AQ319425.1 T7		  
13 RP11-120L14 RS 13q31.1~31.3(SC)
13q31.1c(NCI)
 chr13 83Mb AL162493.21 SHGC-20831 AQ341738.1 SP6,
AQ341740.1 T7		  
13 RP11-440G4 S 13q31.1~31.3(SC)
 chr13 81Mb   D13S962    
13 RP11-51C8 C 13q31(FHCRC)
 chr13 86Mb   AFMC012YF1 AQ053545.1 ,
AQ053548.1 		 
13 RP11-86C3 C 13q31~32(FHCRC)
 chr13 89Mb AL158067.18 SHGC-2163 AQ283029.1 T7  
13 RP11-165N12 CRS 13q31(FHCRC)
13q31.3b(NCI)
13q32.1~33.3(SC)
 chr13 91Mb AL159152.11 SHGC-37261 AQ418312.1 SP6,
AQ418313.1 T7		  
13 RP1-29F17 S 13q31.2~32.1(SC)
       DXS1009E*u    
13 RP11-74A12 S 13q31.2~32.2(SC)
 chr13 94Mb AL139381.24 SHGC-13746 AQ269084.1 SP6,
AQ238147.1*u T7		  
13 RP11-40H10 C 13q31.3~32.1(FHCRC)
 chr13 94Mb   SHGC-13746    
13 RP11-111L24 S 13q32.1~32.3(SC)
 chr13 97Mb AL137249.29 SHGC-781    
13 RP11-113F15 C 13q32(FHCRC)
 chr13 99Mb   SHGC-17234 AQ341944.1 SP6,
AQ341946.1 T7		  
13 RP11-122A8 C 13q32(FHCRC)
 chr13 98Mb AL391122.9 SHGC-9437 AQ342984.1 SP6  
13 RP11-14B13 C 13q32(FHCRC)
 chr13 97Mb   SHGC-10171 B82247.1 SP6  
13 RP11-19J14 C 13q32(FHCRC)
 chr13 97Mb   SHGC-781    
13 RP11-7B23 C 13q32~33(FHCRC)
 chr13 101Mb   SHGC-8465 B71965.1 SP6,
AZ517226.1 T7		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
13 RP11-14C20 C 13q32.2(FHCRC)
 chr13 97Mb   SHGC-10171    
13 RP11-23M9 C 13q32.3~33.1(FHCRC)
 chr13 98Mb AC016189.3 SHGC-31753 B84340.1 SP6,
AQ009371.1 T7,
B84341.1 T7		  
13 RP11-111L17 C 13q33(FHCRC)
 chr13 101Mb   SHGC-4718 AQ341465.1 SP6,
AQ341466.1 T7		  
13 RP11-183A20 C 13q33(FHCRC)
 chr13 107Mb   SHGC-36171 AQ416057.1 SP6,
AQ416060.1 T7		  
13 RP11-25E13 C 13q33(FHCRC)
 chr13 105Mb   SHGC-2178 AQ014015.1 ,
B83193.1 SP6,
B83194.1 T7		  
13 RP11-36L18 C 13q33(FHCRC)
 chr13 102Mb   SHGC-2173 AQ045753.1 SP6,
AQ045756.1 T7		  
13 RP11-45E4 C 13q33(FHCRC)
 chr13 104Mb AC008024.2 SHGC-20838 AQ201119.1 ,
AQ201121.1 		 
13 RP11-86B6 C 13q33(FHCRC)
 chr13 104Mb   SHGC-6660, SHGC-10485*u, 61138*u    
13 RP11-107H21 C 13q33~34(FHCRC)
 chr13 108Mb   SHGC-10588 AQ322687.1 T7,
AQ322686.1*u SP6		  
13 RP11-22O7 C 13q33~34(FHCRC)
 chr13 110Mb AC013713.5 N49419 AQ008943.1 SP6,
B84262.1 SP6,
B84263.1 T7		  
13 RP11-29B2 C 13q33~34(FHCRC)
 chr13 102Mb AL158063.12 T77959, SHGC-12524 B84968.1 T7  
13 RP11-397O8 C 13q33~34(FHCRC)
 chr13 101Mb AL160153.11 RH53253    
13 RP11-61I17 C 13q33~34(FHCRC)
 chr13 108Mb   SHGC-1474, SHGC-1474*u AQ237650.1 SP6  
13 RP11-88E10 S 13q33.1~34(SC)
 chr13 112Mb AL139384.17 SHGC-35218    
13 RP11-98F14 CRS 13q33.3~34(SC)
13q34(FHCRC)
13q34d(NCI)
 chr13 112Mb AL137002.19 H28922 AQ319420.1 T7,
AQ319417.1 SP6		  
13 CTA-402G11 R 13q34(CSMC)
 chr13 109Mb   AFMA058XD5    
13 RP11-19O15 C 13q34(FHCRC)
 chr13 112Mb   SHGC-35218 B83029.1 T7  
13 RP11-230A15 C 13q34(FHCRC)
 chr13 110Mb   SHGC-37358    
13 RP11-3P8 C 13q34(FHCRC)
 chr13 111Mb AC012129.2*u SHGC-2177 AQ316876.1 SP6,
B47994.1 T7		  
13 RP11-569D9 S 13q34(SC)
 chr13 113Mb AL160396.33 RH19474    
total118C:84 R:26 S:21118116 4511873 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.