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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
14 RP11-14J7 C 14q11.1~11.2(FHCRC)
 chr14 20Mb AC018394.2,
AL163195.5		   B81677.1 SP6,
B81678.1*u T7		  
14 RP11-115A12 C 14q11.2(FHCRC)
 chr14 20Mb AC010766.3   AQ344640.1 SP6,
AQ344643.1 T7		  
14 RP11-516D7 C 14q11.2(FHCRC)
 chr14 19Mb AC024399.3, AC110789.6*u      
14 RP11-576P2 C 14q11.2(FHCRC)
 chr14 22Mb AC023226.3      
14 RP11-98N22 C 14q11.2(FHCRC)
 chr14 19Mb AL163152.4   AQ320624.1 T7,
AQ320621.1 SP6		  
14 RP11-329K12 C 14q12(FHCRC)
 chr14 29Mb AC068382.1      
14 RP11-89K22 C 14q12(FHCRC)
 chr14 24Mb AL161666.4   AQ283367.1 T7,
AQ283365.1 SP6		  
14 RP11-81F13 C 14q13(FHCRC)
 chr14 36Mb AL162464.5   AQ281099.1 SP6,
AQ281105.1 T7		  
14 RP11-465B6 R 14q13.2b(NCI)
 chr14 35Mb AL354770.16 RH28319 AZ564739.3 SP6,
AQ581027.1 SP6,
AQ581028.1 T7,
AZ081818.1*u SP6,
AZ081788.1*u T7		  
14 RP11-262M8 C 14q21.3(FHCRC)
 chr14 51Mb AL355833.4 SHGC-12634 AQ489792.1 SP6,
AQ489795.1 T7		  
14 RP11-12P7 C 14q22(FHCRC)
 chr14 53Mb AC021258.3 SHGC-37701, SHGC-37701*u B75077.1 SP6,
B75078.1 T7		  
14 RP11-156E22 C 14q23(FHCRC)
 chr14 66Mb AL139785.5 SHGC-2558    
14 RP11-2L22 C 14q23(FHCRC)
 chr14 58Mb AC012580.3 SHGC-34719 B48626.1 SP6,
B48627.1 T7		  
14 RP11-35D12 C 14q23~24(FHCRC)
 chr14 68Mb AC012278.3 AA424743 AQ046569.1 ,
AQ046572.1 		 
14 RP11-44K16 C 14q23~24(FHCRC)
 chr14 63Mb AC019027.4 SHGC-11003, AA633577, SHGC-24381 AQ202522.1 ,
AQ202521.1 		 
14 RP11-61F4 R 14q23.3~24.1(FHCRC)
 chr14 77Mb AC008372.5   AQ196337.1 ,
AQ196338.1 		 
14 RP11-141I24 C 14q24(FHCRC)
 chr14 76Mb AC008050.6   AQ386113.1 SP6,
AQ386126.1 T7		  
14 RP11-114N19 R 14q24~31(FHCRC)
 chr14 80Mb AC007262.4   AQ342451.1 SP6  
14 RP11-285P21 C 14q24~31(FHCRC)
 chr14 77Mb AC007373.2 SHGC-8892, SHGC-6465    
14 RP11-463C8 R 14q24~31(FHCRC)
 chr14 76Mb AC007375.6 RH26673 AQ634720.1 T7,
AZ521299.1 SP6		  
14 RP11-526N18 R 14q24~31(FHCRC)
 chr14 79Mb AF123462.1 RH78382    
14 CTD-2175M1 R 14q24.3(FHCRC)
 chr14 77Mb AC008044.4   AQ116743.1 T7  
14 CTD-2207P18 R 14q24.3(FHCRC)
 chr14 74Mb AC013451.8   AQ089155.1 T7  
14 CTD-2317F5 R 14q24.3(FHCRC)
 chr14 74Mb AC009363.4   AQ041545.1 SP6  
14 CTD-2516D11 R 14q24.3(FHCRC)
 chr14 76Mb AC007954.7   AQ278735.1 SP6,
AQ278733.1 		 
14 CTD-3014H8 R 14q24.3(FHCRC)
 chr14 77Mb AC007955.4   AQ164919.1 SP6,
AQ091905.1 T7		  
14 CTD-3211F8 R 14q24.3(FHCRC)
14q24.3c(NCI)
 chr14 74Mb AC007956.5   AQ174807.1 T7,
AQ174955.1 SP6		  
14 RP11-209A20 R 14q24.3(FHCRC)
 chr14 79Mb AC007514.5   AQ419486.1 T7  
14 RP11-232C2 R 14q24.3(FHCRC)
 chr14 78Mb AC009396.5   AQ479452.1 T7  
14 RP11-31E9 R 14q24.3(FHCRC)
 chr14 77Mb AC007056.4      
14 RP11-507E23 R 14q24.3(FHCRC)
 chr14 75Mb AC007182.3 RH66923    
14 RP11-588P7 R 14q24.3(FHCRC)
 chr14 78Mb AC022469.5   AQ335031.1 SP6  
14 RP11-98L12 R 14q24.3(FHCRC)
14q24.3d(NCI)
 chr14 75Mb AC008015.5   AQ320418.1 T7,
AQ320414.1 SP6		  
14 CTD-2540C19 R 14q24.3~31.1(FHCRC)
 chr14 79Mb AC010849.3   AQ352093.1 ,
AQ352103.1 SP6		  
14 CTD-2308C24 R 14q24.3~31(FHCRC)
 chr14 80Mb AC022404.7   AQ026531.1 ,
AQ022233.1 		 
14 RP11-242P2 R 14q24.3~31(FHCRC)
 chr14 79Mb AC008056.6   AQ481605.1 SP6,
AQ481609.1 T7		  
14 RP11-63D17 C 14q24.3~31(FHCRC)
 chr14 77Mb AL049832.3 SHGC-6465 AQ199040.1 ,
AQ199042.1 		 
14 RP11-757H14 R 14q24.3~31(FHCRC)
 chr14 80Mb AC022404.7*u   AQ466791.1 T7,
AQ511198.1 SP6		  
14 RP11-76C24 R 14q24.3~31(FHCRC)
 chr14 78Mb AC018514.7   AQ265549.1 SP6,
AQ265550.1 T7		  
14 RP11-501I4 R 14q24.3d(NCI)
 chr14 76Mb AF111168.2 RH53682 AZ081831.1*u T7,
AZ081849.2*u SP6		  
14 CTD-2009K21 R 14q31.1(FHCRC)
 chr14 78Mb AC026888.6   B57448.1 ,
B66397.1 SP6,
AQ218963.1 SP6		  
14 CTD-2243E23 14q31.1(FHCRC)
 chr14 78Mb AC026888.6*u   AQ254103.1 SP6,
AQ178647.1 T7		  
14 CTD-2289B16 R 14q31.1(FHCRC)
 chr14 76Mb AC007686.5   AQ007388.1 ,
B99059.1 SP6		  
14 CTD-2547F10 R 14q31.1(FHCRC)
 chr14 80Mb AC010582.6   AQ391892.1 SP6,
AQ391889.1 		 
14 CTD-2173I4 R 14q31(FHCRC)
 chr14 80Mb AC010072.5   B91088.1 ,
B91089.1 SP6,
AQ292500.1*u SP6		  
14 CTD-2294M16 R 14q31(FHCRC)
 chr14 79Mb AC007058.2   AQ007265.1 SP6,
AQ007263.1 		 
14 RP11-13J10 C 14q31(FHCRC)
 chr2 104Mb AC018730.8 SHGC-817 B76088.1 T7  
14 RP11-270M14 R 14q31(FHCRC)
 chr14 75Mb AF107885.2      
14 RP11-396N8 R 14q31(FHCRC)
     AC007514.5*u      
14 RP11-493G17 R 14q31(FHCRC)
 chr14 76Mb AC007954.7*u RH26673    
14 CTD-2552H2 R 14q31.3(FHCRC)
 chr14 78Mb AC008045.5   AQ395527.1 ,
AQ395529.1 SP6		  
14 RP11-26J5 C 14q32.1(FHCRC)
 chr14 93Mb AC024314.1 SHGC-32639 B84582.1 SP6,
B84583.1 T7		  
14 RP11-28G16 C 14q32.1(FHCRC)
 chr14 91Mb AC016123.2 SHGC-31732 B87285.1 SP6,
B87286.1 T7		  
14 RP11-79J20 C 14q32.1(FHCRC)
 chr14 88Mb AC007263.4 SHGC-20879, SHGC-275 AZ519875.1 T7,
AQ286381.1 T7		  
14 RP11-815P21 C 14q32(FHCRC)
 chr14 105Mb AC084717.2   AQ525752.1*u T7  
14 RP11-123M6 C 14q32.2(FHCRC)
 chr14 100Mb AL117190.6 SHGC-34694, SHGC-33378    
14 RP11-9D19 C 14q32.2~32.3(FHCRC)
 chr14 100Mb AC021765.3*u SHGC-35154, SHGC-33378 B72518.1 T7,
B72517.1*u SP6		  
total57C:24 R:32 S:05756 572045 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.