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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
17 CTB-11O23 R 17p13.3(CSMC)
 chr17 2Mb AC002316.2 AFMB307ZG5*u, D17S1845*u    
17 CTB-41I6 R 17p13(CSMC)
 chr17 8Mb AC002091.2 AFMB362YG1    
17 CTB-44J6 R 17p13(CSMC)
 chr17 5Mb AC001231.3 AFMB022WF9    
17 RP11-147K16 C 17p13(FHCRC)
 chr17 3Mb AC025125.15   AQ372896.1 T7,
AQ372894.1 SP6		  
17 RP11-216P6 C 17p13(FHCRC)
 chr17 0Mb AC015884.15      
17 RP11-356I18 C 17p13(FHCRC)
 chr17 0Mb AC036164.14   AQ535844.1 T7,
AQ535843.1 SP6		  
17 RP11-433M14 C 17p13(FHCRC)
 chr17 1Mb AC068936.2,
AC126406.3		 RH39398 AZ301151.2 T7  
17 RP11-4F24 C 17p13(FHCRC)
 chr17 1Mb AC007873.5 SHGC-5558    
17 RP11-818O24 C 17p13(FHCRC)
 chr17 1Mb AC032044.28      
17 RP11-542C16 C 17p12~13(FHCRC)
 chr17 7Mb AC026954.14      
17 RP11-55C13 C 17p12~13(FHCRC)
 chr17 8Mb AC116169.5 SHGC-32450 AQ081603.1 T7,
AQ081602.1 		 
17 RP11-746E8 R 17p(UCSF)
 chr17 12Mb AC005358.1 sts-H97559 AQ466706.1*u T7  
17 RP11-380H7 R 17p13.3a(NCI)
 chr17 2Mb AC021705.28 RH47913 AZ301131.2 T7,
AQ551627.1 T7,
AZ254638.2 SP6		  
17 RP11-104O19 C 17p13.2(FHCRC)
 chr17 4Mb AC012479.17,
AC087742.9		   AQ317339.1 T7,
AQ317337.1*u SP6		  
17 RP11-135N5 C 17p13.2(FHCRC)
 chr17 2Mb AC015799.23 SHGC-5886 AQ381150.1 SP6,
AQ381154.1*u T7		  
17 RP11-587F22 C 17p13.2(FHCRC)
 chr17 3Mb AC024194.2,
AC090165.2		      
17 RP11-459C13 R 17p13.2b(NCI)
 chr17 3Mb AC067815.5 RH55224 AZ301156.2 SP6,
AQ585429.1 T7,
AZ301155.2 T7		  
17 RP11-104G23 C 17p12(FHCRC)
 chr17 11Mb AC021494.6 AA293050 AQ316365.1 T7,
AQ316363.1*u SP6		  
17 RP11-104H15 C 17p12(FHCRC)
 chr17 7Mb AC113189.11   AQ313881.1 SP6,
AQ313882.1 T7		  
17 RP11-1099M24 C 17p12(FHCRC)
 chr17 7Mb AC104581.22   AQ696815.1 SP6  
17 RP11-1D5 C 17p12(FHCRC)
 chr17 7Mb AC015734.15, AC114686.2*u AA071486 B47673.1 T7,
AQ315701.1*u SP6		  
17 RP11-42F12 C 17p12(FHCRC)
 chr17 14Mb AC011592.5*u SHGC-2236 AQ115600.1 ,
AQ060523.1 		 
17 RP11-89A15 C 17p12(FHCRC)
 chr17 8Mb AC135070.2 SHGC-12899 AQ281795.1 T7,
AQ281792.1 SP6		  
17 RP11-160E2 C 17p11.2(FHCRC)
 chr17 18Mb AC007952.15   AQ375988.1 SP6,
AQ375990.1 T7		  
17 RP11-273K13 C 17p11.2(FHCRC)
 chr17 15Mb AC018989.15   AQ479661.1 SP6,
AZ517147.1 T7		  
17 RP11-369K5 C 17p11.2(FHCRC)
 chr17 19Mb AC022286.9 RH65769    
17 RP11-434D2 C 17p11.2(FHCRC)
 chr17 20Mb AC015818.32      
17 RP11-64J19 C 17p11.2(FHCRC)
 chr17 21Mb AC021099.4,
AC087294.18		 AA829383 AQ238690.1 T7,
AQ238689.1 SP6		  
17 RP11-299G20 C 17q11.1~11.2(FHCRC)
 chr17 22Mb AC023024.6*u   AQ503905.1 SP6  
17 RP11-357J12 C 17q11.1~11.2(FHCRC)
 chr17 24Mb AC027810.3   AZ518918.1 SP6,
AQ553102.1 T7		  
17 RP11-403E9 C 17q11.1~11.2(FHCRC)
 chr17 25Mb AC024065.5,
AC087644.8		      
17 RP11-746M1 C 17q11.1~11.2(FHCRC)
 chr17 20Mb AC022214.3,
AC087393.7		   AQ453811.1 T7,
AQ450785.1 SP6		  
17 RP11-321A17 C 17q11.2(FHCRC)
 chr17 24Mb AC024619.16   AQ535909.1 SP6,
AQ535910.1 T7		  
17 RP11-466A19 C 17q11.2(FHCRC)
 chr17 27Mb AC079336.5   AQ582867.1 SP6,
AQ582868.1 T7		  
17 RP11-88B16 C 17q11.2(FHCRC)
 chr17 25Mb AC104588.1   AZ516116.1 T7,
AQ286604.1 T7,
AQ286602.1 SP6		  
17 RP11-142O6 C 17q11.2~12(FHCRC)
 chr17 26Mb AC079915.7   AQ385896.1 SP6,
AQ385898.1 T7		  
17 RP11-521P1 CS 17q11.2(SC)
17q12(FHCRC)
 chr17 29Mb AC011193.3      
17 RP11-19G24 S 17q11.2~21.1(SC)
 chr17 32Mb AC016482.5   B89544.1 SP6,
B82994.1 T7		  
17 CTD-2019C10 C 17q12(FHCRC)
 chr17 34Mb AC040933.12   AQ229076.1 SP6,
AQ228277.1*u T7		  
17 RP11-1094M14 C 17q12(FHCRC)
 chr17 30Mb AC015911.8   AQ696492.1 SP6  
17 RP11-196P12 C 17q12(FHCRC)
 chr17 31Mb AC079019.2   AQ415772.1 T7,
AQ415769.1 SP6		  
17 RP11-387H17 C 17q12(FHCRC)
 chr17 35Mb AC019095.3,
AC090844.7		      
17 RP11-425G1 C 17q12(FHCRC)
 chr17 34Mb AC024189.3,
AC087652.1		      
17 RP11-605F20 C 17q12(FHCRC)
 chr17 36Mb AC090283.7   AQ359166.1 SP6,
AQ359092.1*u T7		  
17 RP11-62N23 C 17q12(FHCRC)
 chr17 34Mb AC025531.3,
AC087491.5		   AQ195016.1 ,
AQ195020.1 		 
17 RP11-749I16 C 17q12(FHCRC)
 chr17 35Mb AC068669.21   AQ617672.1*u T7,
AQ617907.1*u SP6		  
17 RP11-81D5 C 17q12(FHCRC)
 chr17 32Mb AC015940.2*d   AQ281023.1 SP6,
AQ281025.1 T7		 multiple_placements_on_genome
17 RP11-81D5 C 17q12(FHCRC)
 chr17 20Mb AC015940.2   AQ281023.1*d SP6,
AQ281025.1*d T7		 multiple_placements_on_genome
17 RP11-94L15 C 17q12(FHCRC)
 chr17 35Mb AC079199.9 AA443351 AQ281743.1 SP6,
AQ315963.1 T7		  
17 RP11-9B11 C 17q12(FHCRC)
 chr17 37Mb AC069250.14,
AC087691.9		   B72483.1*u SP6  
17 RP11-400F19 C 17q12~21(FHCRC)
 chr17 37Mb AC067852.23      
17 RP11-506G7 C 17q12~21(FHCRC)
 chr17 38Mb AC016889.28      
17 RP11-209M4 C 17q21(FHCRC)
 chr17 39Mb AC055813.9   AQ420215.1 SP6,
AQ420216.1 T7		  
17 RP11-242D8 C 17q21(FHCRC)
 chr17 38Mb AC060780.18   AQ488580.1 SP6,
AQ488582.1*u T7		  
17 RP11-948G15 C 17q21(FHCRC)
 chr17 38Mb AC046171.3   AQ571046.1 T7,
AQ565418.1 SP6		  
17 RP11-100E5 C 17q21~22(FHCRC)
 chr17 38Mb AC022278.13,
AC087650.12		   AQ320338.1 SP6,
AQ320341.1 T7		  
17 RP11-290H9 C 17q21~22(FHCRC)
 chr17 42Mb AC068234.8      
17 RP11-463M16 C 17q21~22(FHCRC)
 chr17 44Mb AC068531.9   AZ515903.1 SP6,
AQ634884.1 T7		  
17 RP11-472H5 C 17q21~22(FHCRC)
 chr17 44Mb AC060233.4,
AC099813.1		      
17 RP11-58O9 C 17q21.2(FHCRC)
 chr17 35Mb AC018629.12 RH54983, SHGC-2234*u, SHGC-33121*u AQ201660.1 ,
AQ201663.1 		 
17 CTB-43I4 R 17q21.3~22(CSMC)
 chr17 47Mb AC002090.1 AFMA351WE1    
17 RP11-1079K10 C 17q22(FHCRC)
 chr17 44Mb AC091180.20   AQ740059.1*u T7,
AQ745294.1*u SP6		  
17 RP11-166P13 C 17q22(FHCRC)
 chr17 52Mb AC007114.8   AQ419779.1 T7,
AQ419778.1 SP6		  
17 RP11-361K8 C 17q22(FHCRC)
 chr17 43Mb AC009789.21   AQ541451.1 T7,
AQ541448.1*u SP6		  
17 RP11-506D12 C 17q22(FHCRC)
 chr17 46Mb AC091062.5, AC015841.5*u      
17 RP11-515O17 C 17q22(FHCRC)
 chr17 50Mb AC007638.8      
17 RP11-142B17 CR 17q22~23(FHCRC)
17q22d~23.1a(NCI)
 chr17 54Mb AC021455.4 R37145 AQ385987.1 SP6,
AQ385990.1 T7		  
17 RP11-506H21 C 17q22~23(FHCRC)
 chr17 53Mb AC005962.1      
17 RP11-670E13 R 17q23(UCSF)
 chr17 52Mb AC015912.16   AQ464224.1*d T7,
AQ610206.1*d SP6		 multiple_placements_on_genome
17 RP11-670E13 R 17q23(UCSF)
 chr22 25Mb AC015912.16*d   AQ610206.1 SP6,
AQ464224.1 T7		 multiple_placements_on_genome
17 RP11-87N3 C 17q23(FHCRC)
 chr17 59Mb AC009994.10 H27564    
17 RP11-89H15 C 17q23(FHCRC)
 chr17 59Mb AC025362.12   AQ284719.1 SP6,
AQ284720.1 T7		  
17 RP11-361P13 C 17q23~24(FHCRC)
 chr17 59Mb AC023662.2   AQ542847.1*u T7  
17 RP11-721P9 C 17q23~24(FHCRC)
 chr17 58Mb AC068401.2      
17 RP11-350J20 CS 17q24(FHCRC)
     AL355312.24*u      
17 RP11-352P21 C 17q24(FHCRC)
 chr17 64Mb AC080147.2   AQ532857.1 SP6,
AQ532859.1 T7		  
17 RP11-52B5 C 17q24(FHCRC)
 chr17 62Mb AC027772.2 SHGC-974*u AQ115692.1 ,
AQ083109.1 		 
17 RP11-153A23 C 17q24~25(FHCRC)
 chr17 73Mb AC021593.15 RH11430 AQ385790.1 T7,
AQ385788.1 SP6		  
17 RP11-61B11 C 17q24~25(FHCRC)
 chr17 71Mb AC068436.1   AQ195114.1 ,
AQ195111.1 		 
17 RP11-84E24 C 17q24~25(FHCRC)
 chr17 67Mb AC007461.8 SHGC-35378    
17 RP11-304I14 R 17q24.2b(NCI)
 chr17 63Mb AC023123.3,
AC087389.2		 RH12010    
17 RP11-293K20 R 17q24.3a(NCI)
 chr17 64Mb AC005495.2 RH39341 AZ403256.2 SP6,
AZ301118.2 T7		  
17 RP11-387C17 R 17q24.3c(NCI)
 chr17 68Mb AC021467.2*u RH69804 AZ301138.2 T7,
AZ301139.2 SP6		  
17 RP11-16C1 C 17q25(FHCRC)
 chr17 70Mb AC011933.17   B75437.1 T7,
B75436.1 SP6		  
17 RP11-388C12 C 17q25(FHCRC)
 chr17 78Mb AC024361.21      
17 RP11-552F3 C 17q25(FHCRC)
 chr17 71Mb AC021162.2,
AC087289.9		      
17 RP11-559K16 C 17q25(FHCRC)
 chr17 74Mb AC025609.3      
17 RP11-806H10 C 17q25(FHCRC)
 chr17 73Mb AC061992.11   AQ523441.1*u T7  
17 RP11-399J11 R 17q25.1b~25.1c(NCI)
 chr17 70Mb AC068874.21 RH10760 AZ301143.2 T7,
AZ301144.2 SP6		  
total87C:74 R:13 S:38786 872857 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.