NCBI HomeGenomic BiologyHumanBAC Resource  
  Search for

Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
Download or Display:


 
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
17 RP11-294J5 R 17p13.3g(NCI)
 chr17 1Mb   RH47135 CL423322.1 SP6,
CL423327.1 T7		  
17 CTB-11O23 R 17p13.3(CSMC)
 chr17 2Mb AC002316.2 AFMB307ZG5*u, D17S1845*u    
17 RP11-26N16 C 17p13.3(FHCRC)
 chr17 0Mb   SHGC-31242 B86973.1 T7,
B86972.1 SP6		  
17 CTB-16B3 R 17p13(CSMC)
 chr17 0Mb   D17S926    
17 CTB-41I6 R 17p13(CSMC)
 chr17 8Mb AC002091.2 AFMB362YG1    
17 CTB-44J6 R 17p13(CSMC)
 chr17 5Mb AC001231.3 AFMB022WF9    
17 CTB-61O15 R 17p13(CSMC)
       AFMB307ZG5*u, D17S1845*u    
17 RP11-433M14 C 17p13(FHCRC)
 chr17 1Mb AC068936.2,
AC126406.3		 RH39398 AZ301151.2 T7  
17 RP11-4F24 C 17p13(FHCRC)
 chr17 1Mb AC007873.5 SHGC-5558    
17 RP11-61B16 C 17p13(FHCRC)
 chr17 0Mb   SHGC-33249 AQ196275.1 ,
AQ196272.1 		 
17 RP11-89D11 C 17p13(FHCRC)
 chr17 7Mb   SHGC-35513 AQ283790.1 T7,
AZ517734.1 T7,
AQ283789.1 SP6		  
17 RP11-91C8 C 17p13(FHCRC)
 chr17 0Mb   SHGC-33249 AQ283738.1 T7,
AQ283734.1 SP6		  
17 RP11-55C13 C 17p12~13(FHCRC)
 chr17 8Mb AC116169.5 SHGC-32450 AQ081603.1 T7,
AQ081602.1 		 
17 RP11-746E8 R 17p(UCSF)
 chr17 12Mb AC005358.1 sts-H97559 AQ466706.1*u T7  
17 RP11-357O7 R 17p13.3d(NCI)
 chr17 1Mb   RH54972 AZ254624.2 T7,
AZ254625.2 SP6		  
17 RP11-380H7 R 17p13.3a(NCI)
 chr17 2Mb AC021705.28 RH47913 AZ301131.2 T7,
AQ551627.1 T7,
AZ254638.2 SP6		  
17 RP11-545O6 R 17p13.2b~13.2c(NCI)
 chr17 3Mb   RH16861 AZ254609.2 T7,
AZ254610.2 SP6		  
17 RP11-135N5 C 17p13.2(FHCRC)
 chr17 2Mb AC015799.23 SHGC-5886 AQ381150.1 SP6,
AQ381154.1*u T7		  
17 RP11-459C13 R 17p13.2b(NCI)
 chr17 3Mb AC067815.5 RH55224 AZ301156.2 SP6,
AQ585429.1 T7,
AZ301155.2 T7		  
17 RP11-457I18 R 17p13.2a(NCI)
 chr17 5Mb   RH39319 AZ254627.2 SP6,
AZ254626.2 T7		  
17 RP11-61B20 C 17p13.1(FHCRC)
 chr17 6Mb   SHGC-12725 AQ196280.1 ,
AQ196282.1 		 
17 RP11-9A21 C 17p13.1(FHCRC)
 chr17 7Mb   SHGC-35513 B72479.1 SP6  
17 RP11-383G9 R 17p13.1a(NCI)
 chr17 8Mb   RH12513 AZ301120.2 SP6,
AZ301119.2 T7		  
17 CTA-402D5 R 17p12(CSMC)
 chr17 10Mb   D17S954    
17 RP11-104G23 C 17p12(FHCRC)
 chr17 11Mb AC021494.6 AA293050 AQ316365.1 T7,
AQ316363.1*u SP6		  
17 RP11-1D5 C 17p12(FHCRC)
 chr17 7Mb AC015734.15, AC114686.2*u AA071486 B47673.1 T7,
AQ315701.1*u SP6		  
17 RP11-42F12 C 17p12(FHCRC)
 chr17 14Mb AC011592.5*u SHGC-2236 AQ115600.1 ,
AQ060523.1 		 
17 RP11-89A15 C 17p12(FHCRC)
 chr17 8Mb AC135070.2 SHGC-12899 AQ281795.1 T7,
AQ281792.1 SP6		  
17 RP11-385G5 R 17p12c(NCI)
 chr17 11Mb   RH48639 AZ301130.2 SP6,
AZ301129.2 T7		  
17 RP11-459E6 R 17p12a(NCI)
 chr17 15Mb   RH76173 AZ301158.2 SP6,
AZ301157.2 T7		  
17 RP11-404D6 R 17p11.2i(NCI)
 chr17 16Mb   RH9987 AZ301145.2 T7,
AZ301146.2 SP6		  
17 RP11-369K5 C 17p11.2(FHCRC)
 chr17 19Mb AC022286.9 RH65769    
17 RP11-64J19 C 17p11.2(FHCRC)
 chr17 21Mb AC021099.4,
AC087294.18		 AA829383 AQ238690.1 T7,
AQ238689.1 SP6		  
17 RP11-525O11 R 17p11.2g~11.2h(NCI)
 chr17 17Mb   RH17427*u AZ301335.2 T7,
AZ301336.2 SP6		  
17 RP11-363P3 R 17p11.2c(NCI)
 chr17 20Mb   RH65707 AZ301137.2 SP6,
AZ301136.2 T7		  
17 RP11-405P10 R 17p11.2a(NCI)
 chr17 20Mb   RH39433 AZ301147.2 T7,
AZ301148.2 SP6		  
17 CTA-400E3 R 17q11.2(CSMC)
 chr17 22Mb   D17S1543    
17 CTA-571F2 R 17q11.2(CSMC)
 chr17 27Mb   D17S2039    
17 CTB-44L10 R 17q11.2(CSMC)
 chr17 30Mb   D17S933    
17 CTB-7B2 R 17q11.2(CSMC)
 chr17 26Mb   IB518, AFMA216ZA5    
17 CTB-7H10 R 17q11.2(CSMC)
 chr17 25Mb   EST109304    
17 CTB-9N20 R 17q11.2(CSMC)
 chr17 25Mb   EST109304    
17 RP11-100L12 C 17q11.2(FHCRC)
 chr17 25Mb   SHGC-11022 AQ311691.1 T7,
AQ345666.1 SP6		  
17 RP11-73F15 C 17q11.2(FHCRC)
 chr17 26Mb   SHGC-37343 AQ266525.1 SP6  
17 RP11-38L14 S 17q11.2~21.31(SC)
 chr17 35Mb   SHGC-2234*u, SHGC-33121*u AQ029430.1 T7,
AQ029428.1 SP6		  
17 RP11-525H19 R 17q11.2c(NCI)
 chr17 26Mb   RH55050 AZ254602.2 SP6,
AZ254601.2 T7		  
17 RP11-398A1 R 17q11.2d(NCI)
 chr17 26Mb   RH28512 AZ254639.2 SP6,
AZ301142.2 T7		  
17 RP11-451O17 R 17q11.2e(NCI)
 chr17 27Mb   RH47827 AZ301154.2 SP6,
CL423353.1 SP6		  
17 CTB-47E12 R 17q12(CSMC)
 chr17 38Mb   EST107640    
17 RP11-252N11 C 17q12(FHCRC)
 chr17 30Mb   SHGC-32545 AQ504453.1*u T7  
17 RP11-58O8 C 17q12(FHCRC)
 chr17 30Mb   SHGC-34858 AQ199256.1  
17 RP11-94L15 C 17q12(FHCRC)
 chr17 35Mb AC079199.9 AA443351 AQ281743.1 SP6,
AQ315963.1 T7		  
17 RP11-87N6 C 17q12~21(FHCRC)
 chr17 35Mb   SHGC-13537, AFMA057VG9*u AQ285091.1 T7  
17 RP11-294G4 R 17q12b(NCI)
 chr17 30Mb   RH55169 AZ301338.2 SP6,
AQ508306.1 T7,
AZ301337.2 T7		  
17 CTB-8I17 R 17q21.1(CSMC)
 chr17 35Mb   AFMA302YB5    
17 RP11-241H2 C 17q21.1~21.2(FHCRC)
       SHGC-32545*u, SHGC-11286*u, SHGC-2234*u, SHGC-33121*u, SHGC-12497*u, SHGC-31685*u, SHGC-13537*u AQ482539.1*u T7  
17 RP11-29C11 C 17q21.1~21.2(FHCRC)
 chr17 36Mb   SHGC-12324 B87496.1 T7,
B87495.1 SP6		  
17 RP11-266I24 C 17q21(FHCRC)
 chr17 38Mb   SHGC-34202 AQ490753.1 SP6,
AQ490757.1 T7		  
17 RP11-9M20 C 17q21(FHCRC)
 chr17 40Mb   SHGC-2261    
17 CTB-9F11 R 17q21.2(CSMC)
 chr17 42Mb   AFMB031WF5    
17 RP11-268H17 C 17q21.2(FHCRC)
 chr17 36Mb   SHGC-31371 AQ490954.1 T7,
AQ490951.1 SP6		  
17 RP11-513C18 R 17q21.2a~21.2b(NCI)
 chr17 35Mb   RH54983 AZ301169.2 SP6,
AZ301168.2 T7		  
17 RP11-58O9 C 17q21.2(FHCRC)
 chr17 35Mb AC018629.12 RH54983, SHGC-2234*u, SHGC-33121*u AQ201660.1 ,
AQ201663.1 		 
17 CTA-625G4 R 17q21.3(CSMC)
 chr17 44Mb   D17S2035    
17 CTB-56I7 R 17q21.3(CSMC)
 chr17 42Mb   D17S920, D17S791    
17 RP11-110H20 C 17q21.3(FHCRC)
 chr17 44Mb   SHGC-33986, SHGC-9761 AQ320046.1 SP6,
AQ320062.1 T7		  
17 RP11-234J24 C 17q21.3(FHCRC)
 chr17 42Mb   SHGC-11971    
17 CTB-43I4 R 17q21.3~22(CSMC)
 chr17 47Mb AC002090.1 AFMA351WE1    
17 RP11-436J4 R 17q21.31c(NCI)
 chr17 39Mb   RH76314 AZ301153.2 SP6,
AZ301152.2 T7		  
17 RP11-510P20 R 17q21.32a(NCI)
 chr17 42Mb   RH70724 AZ301167.2 SP6,
AZ301166.2 T7		  
17 RP11-248I3 C 17q21.32(FHCRC)
 chr17 41Mb   AFMB351XC9*u AQ491350.1 T7  
17 RP11-36J16 C 17q21.32(FHCRC)
 chr17 44Mb   SHGC-33986 AQ045701.1 T7  
17 RP11-423H11 R 17q21.32c(NCI)
 chr17 43Mb   RH17497 AZ254636.2 T7,
AZ254637.2 SP6,
AQ549495.1*u SP6,
AQ549498.1*u T7		  
17 RP11-379D19 R 17q21.33c(NCI)
 chr17 46Mb   RH24999 AZ301124.2 SP6,
AQ531881.1 SP6,
AQ531884.1 T7,
AZ301123.2 T7		 multiple_placements_on_genome
17 RP11-379D19 R 17q21.33c(NCI)
 chrY 57Mb   RH24999*d AQ531884.1 T7,
AZ301123.2 T7,
AZ301124.2*d SP6,
AQ531881.1*d SP6		 multiple_placements_on_genome
17 CTB-55N22 R 17q22(CSMC)
 chr17 50Mb   D17S787    
17 RP11-131C4 C 17q22(FHCRC)
 chr17 47Mb   SHGC-714    
17 RP11-143M4 C 17q22(FHCRC)
 chr17 47Mb   SHGC-7374 AQ371641.1 SP6  
17 RP11-42M14 C 17q22(FHCRC)
 chr17 47Mb   SHGC-8790 AQ046621.1 ,
AQ116132.1 		 
17 RP11-142B17 CR 17q22~23(FHCRC)
17q22d~23.1a(NCI)
 chr17 54Mb AC021455.4 R37145 AQ385987.1 SP6,
AQ385990.1 T7		  
17 RP11-481M4 R 17q22d(NCI)
 chr17 54Mb   RH55198 AZ254622.2 SP6,
AQ628678.1 SP6,
AZ301163.2 T7		  
17 CTB-61P23 R 17q23(CSMC)
 chr17 58Mb   D17S794    
17 RP11-118K23 C 17q23(FHCRC)
 chr17 55Mb   SHGC-36454    
17 RP11-87N3 C 17q23(FHCRC)
 chr17 59Mb AC009994.10 H27564    
17 RP11-561K8 R 17q23.2c(NCI)
 chr17 57Mb   RH10683*u AZ254615.2 T7,
AZ254616.2 SP6		  
17 RP11-489G5 R 17q24.1a(NCI)
 chr17 60Mb   RH18264 AZ254631.2 SP6,
AZ254630.2 T7,
AQ633219.1*u T7		  
17 CTA-764F6 R 17q24(CSMC)
 chr17 70Mb   IB754    
17 RP11-52B5 C 17q24(FHCRC)
 chr17 62Mb AC027772.2 SHGC-974*u AQ115692.1 ,
AQ083109.1 		 
17 RP11-65C22 C 17q24(FHCRC)
 chr17 68Mb   SHGC-21021 AQ241096.1 SP6,
AQ200671.1 		 
17 RP11-153A23 C 17q24~25(FHCRC)
 chr17 73Mb AC021593.15 RH11430 AQ385790.1 T7,
AQ385788.1 SP6		  
17 RP11-225G19 C 17q24~25(FHCRC)
 chr17 69Mb   SHGC-36245    
17 RP11-41E12 C 17q24~25(FHCRC)
 chr17 68Mb   SHGC-11717 AQ029069.1 SP6  
17 RP11-84E24 C 17q24~25(FHCRC)
 chr17 67Mb AC007461.8 SHGC-35378    
17 RP11-304I14 R 17q24.2b(NCI)
 chr17 63Mb AC023123.3,
AC087389.2		 RH12010    
17 RP11-387O17 R 17q24.2c(NCI)
 chr17 63Mb   RH16794 AZ301140.2 T7,
AZ301141.2 SP6		  
17 RP11-293K20 R 17q24.3a(NCI)
 chr17 64Mb AC005495.2 RH39341 AZ403256.2 SP6,
AZ301118.2 T7		  
17 RP11-300G13 R 17q24.3b(NCI)
 chr17 65Mb   RH46249 AZ301125.2 T7,
AZ301126.2 SP6		  
17 RP11-387C17 R 17q24.3c(NCI)
 chr17 68Mb AC021467.2*u RH69804 AZ301138.2 T7,
AZ301139.2 SP6		  
17 RP11-319A23 R 17q25.1a(NCI)
 chr17 68Mb   RH26980 AZ254632.2 T7,
CL423225.1 T7,
CL423220.1 SP6		  
17 CTA-721F9 R 17q25.1(CSMC)
 chr17 72Mb   WI-7837    
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
17 RP11-145C11 C 17q25.1(FHCRC)
 chr17 70Mb   SHGC-31760    
17 RP11-76G4 C 17q25.1(FHCRC)
 chr17 70Mb   SHGC-329 AQ265611.1 SP6,
AQ266208.1 T7		  
17 RP11-128J1 C 17q25(FHCRC)
 chr17 74Mb   SHGC-2234    
17 RP11-201E5 C 17q25(FHCRC)
 chr17 71Mb   SHGC-37061    
17 RP11-84J3 C 17q25(FHCRC)
 chr17 74Mb   SHGC-11286    
17 RP11-399J11 R 17q25.1b~25.1c(NCI)
 chr17 70Mb AC068874.21 RH10760 AZ301143.2 T7,
AZ301144.2 SP6		  
17 RP11-526M7 R 17q25.1d(NCI)
 chr17 72Mb   RH68144 AZ254604.2 SP6,
AZ254603.2 T7		  
17 RP11-160F4 C 17q25.2(FHCRC)
 chr4 28Mb   SHGC-33067*d AZ516875.1 SP6,
AQ377826.1 T7		 multiple_placements_on_genome
17 RP11-160F4 C 17q25.2(FHCRC)
 chr17 75Mb   SHGC-33067 AQ377826.1*d T7,
AZ516875.1*d SP6		 multiple_placements_on_genome
17 RP11-26B13 C 17q25.2~25.3(FHCRC)
 chr17 74Mb   SHGC-31110 B86818.1 T7  
17 RP11-537M14 R 17q25.3a(NCI)
 chr17 74Mb   RH45138 AZ254607.2 T7,
AZ254608.2 SP6		  
17 RP11-165M24 C 17q25.3(FHCRC)
 chr17 77Mb   SHGC-31983    
17 RP11-46E14 C 17q25.3(FHCRC)
 chr17 75Mb   SHGC-97, SHGC-97*u AQ201029.1 ,
AQ201028.1 		 
17 RP11-467J3 R 17q25.3c~25.3d(NCI)
 chr17 74Mb   RH45324*u, RH47506*u AZ254628.2 T7,
AZ254629.2 SP6		  
17 CTB-50C4 17qter(UChicago)
 chr17 77Mb   D17S928    
total113C:53 R:59 S:1113111 2811375 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.