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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 RP11-88C10 CR 18p11.32c(FHCRC)
18p11.32c(NCI)
 chr18 0Mb   AFM178XC3, 45002*u, AFM016YC5*u, 14236*u, AFM016YC5*u, AFM178XC3*u CG734315.1 T7,
BZ749196.1 SP6,
CG734314.1 SP6		  
18 RP11-694N4 C 18p11.3(FHCRC)
 chr18 3Mb AP002471.2   AQ496520.1*u SP6  
18 RP11-778P8 C 18p11.3(FHCRC)
 chr18 0Mb AC021474.3   AQ461822.1*u T7  
18 RP11-89P6 C 18p11.3(FHCRC)
 chr18 5Mb     AQ286719.1 T7,
AQ286716.1*u SP6		  
18 RP11-29P22 C 18p11.2~11.3(FHCRC)
 chr18 9Mb AC021927.3   AQ003179.1 SP6,
B87659.1 T7		  
18 RP11-752I11 C 18p11.2~11.3(FHCRC)
 chr18 5Mb AP001019.2   AQ511037.1 T7,
AQ499120.1 SP6		  
18 RP11-79O10 C 18p11.2~11.3(FHCRC)
 chr18 6Mb     AQ283314.1 T7,
AQ629699.1 T7,
AQ283304.1*u SP6		  
18 RP11-91I8 C 18p11.2~11.3(FHCRC)
 chr18 6Mb AP005205.3   AQ282471.1 T7,
AQ282470.1 SP6		  
18 CTD-2134I3 R 18p11(UCSF)
 chr18 0Mb     AQ700868.1 T7,
AQ708817.1 SP6		  
18 RP11-78H1 R 18p11.32a~11.32b(NCI)
 chr18 2Mb   AFM299YF1, AFM299YF1*u AQ286480.1 T7,
AQ286478.1 SP6		  
18 RP11-55N14 R 18p11.32a(NCI)
 chr18 2Mb AC015958.3 AFMA175YE9 AQ082341.1 ,
AQ115890.1 		 
18 RP11-106J7 R 18p11.31e~11.32a(NCI)
 chr18 3Mb AC015945.3 D18S63, AFM205TD6 AQ317978.1 T7,
AQ317975.1 SP6,
BZ749025.1 SP6,
BZ749026.1*u T7		  
18 RP11-106O1 R 18p11.31e(NCI)
 chr18 3Mb   AFM080XD7, AFM080XD7*u CG734316.1 SP6,
CG734317.1 T7		  
18 RP11-80L18 C 18p11.31(FHCRC)
 chr18 3Mb     AQ317818.1 SP6,
AQ284168.1 T7		  
18 RP11-88J12 C 18p11.31(FHCRC)
 chr18 3Mb     AQ280989.1 SP6,
AZ516279.1 T7,
AQ280992.1 T7		  
18 RP11-113J12 R 18p11.31d(NCI)
 chr18 3Mb   AFM238YD8, AFM238YD8*u AQ343331.1 SP6,
AQ343333.1 T7		  
18 RP11-102E12 R 18p11.31d~11.31c(NCI)
 chr18 4Mb   AFMB329WD5 AQ312325.1 SP6,
AQ312328.1 T7		  
18 RP11-105C15 R 18p11.31c(NCI)
 chr18 5Mb   AFM283XG9 AQ316136.1 SP6,
AQ316138.1 T7		  
18 CTD-2017G14 C 18p11.2(FHCRC)
 chr18 9Mb     B67020.1 ,
B67021.1 SP6,
B59394.1 SP6,
AQ225054.1*u SP6		  
18 RP11-44O1 C 18p11.2(FHCRC)
 chr18 12Mb AC007734.4   AQ196159.1  
18 RP11-808F20 C 18p11.2(FHCRC)
 chr18 13Mb AP001268.2   AQ524075.1 T7,
AQ525090.1 SP6		  
18 RP11-720L3 C 18p11.1~11.2(FHCRC)
 chr18 13Mb AP001525.6   AQ615608.1 SP6,
AQ615466.1 T7		  
18 RP11-102O20 R 18p11.22c(NCI)
 chr18 9Mb   AFM259VH9, AFM259VH9*u AQ313383.1 T7,
AQ313380.1 SP6		  
18 RP11-67I20 R 18p11.22b~11.22c(NCI)
 chr18 9Mb   AFMA054YG9 BZ749177.1 T7,
AQ239191.1 T7,
CG734255.1 T7,
CG734254.1 SP6		  
18 RP11-24G5 R 18p11.22b(NCI)
 chr18 10Mb   AFMA053WD1 B84417.1 SP6,
AQ013368.1 ,
B84418.1 T7		  
18 RP11-7E5 R 18p11.22a(NCI)
 chr18 10Mb AC016067.2*u D18S1158 BZ749185.1 T7,
BZ749184.1 SP6		  
18 RP11-151D11 R 18p11.21e(NCI)
 chr18 13Mb   AFM266WA5, AFM266WA5*u AQ378182.1 SP6,
BZ749045.1 SP6,
BZ749046.1 T7		  
18 RP11-16A21 CR 18p11.21b(FHCRC)
18p11.21b(NCI)
 chr18 12Mb   AFM254YD5, AFM254YD5*u BZ749051.1 SP6,
BZ749052.1 T7		  
18 RP11-96I11 R 18p11.21a(NCI)
 chr18 12Mb   AFM214XD2 BZ749202.1 SP6,
BZ749203.1 T7,
AQ317713.1*u SP6		  
18 RP11-90E3 C 18p11.1~18q11.1(FHCRC)
         AQ281487.1*u SP6,
AQ281490.1*u T7,
AZ517906.1*u T7		  
18 RP11-90G13 C 18p11.1~18q11.1(FHCRC)
         AQ286862.1*u SP6,
AQ286866.1*u T7		  
18 RP11-91B23 C 18p11.1~18q11.1(FHCRC)
         AQ283256.1*u SP6,
AQ283259.1*u T7,
AZ518767.1*u T7		  
18 RP11-91F15 C 18p11.1~18q11.1(FHCRC)
         AZ519293.1*u T7  
18 RP11-318O16 S 18cen(SC)
 chr20 32Mb     AQ536396.1 T7,
AQ536395.1 SP6		  
18 RP11-18K7 C 18q11.1~11.2(FHCRC)
 chr18 17Mb AC009669.5   B85505.1 SP6,
B85506.1 T7		  
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
 chr18 23Mb AC009442.4*d,
AC107296.4*d		   AQ282194.1 SP6,
B63175.1 T7		 multiple_placements_on_genome
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
 chr3 190Mb AC009442.4,
AC107296.4		   B63175.1*d T7,
AQ282194.1*d SP6		 multiple_placements_on_genome
18 CTD-2100E13 C 18q11.2(FHCRC)
 chr18 19Mb     AQ566044.1 T7,
AQ624102.1 SP6		  
18 RP11-10L24 C 18q11.2(FHCRC)
 chr18 20Mb AC009668.6   B72957.1 SP6,
AZ520943.1*u T7		  
18 RP11-676D16 R 18q11.2(FHCRC)
 chr18 23Mb AC087383.1   AQ410056.1 SP6,
AQ611042.1 T7		  
18 RP11-789C17 C 18q11.2(FHCRC)
 chr18 8Mb AP001094.6   AQ462496.1 SP6  
18 RP11-799B12 C 18q11.2(FHCRC)
 chr18 19Mb AC090772.9,
AP001177.3		   AQ556168.1 T7  
18 RP11-79F3 C 18q11.2(FHCRC)
 chr18 19Mb     AQ284127.1 T7,
AQ284124.1 SP6		  
18 RP11-90G7 C 18q11.2(FHCRC)
 chr18 24Mb     AQ281595.1 SP6,
AQ281598.1 T7		  
18 RP11-90L7 C 18q11.2(FHCRC)
 chr18 21Mb     AZ518566.1 T7,
AQ284489.1 T7,
AQ284487.1 SP6		  
18 RP11-297N1 C 18q11.2~12(FHCRC)
 chr18 24Mb AC027736.2*u   AQ505129.1 T7,
AQ505126.1 SP6		  
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chr18 22Mb AC010854.3 RH18229 AZ301833.2 SP6,
AQ528551.1 SP6,
AQ528554.1 T7,
AZ301832.2 T7		 multiple_placements_on_genome
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chrY 57Mb AC010854.3*d RH18229*d AZ301832.2 T7,
AQ528554.1 T7,
AZ301833.2*d SP6,
AQ528551.1*d SP6		 multiple_placements_on_genome
18 RP11-552O4 C 18q11.2~12(FHCRC)
 chr18 22Mb AC018371.10 RH26115 AZ301948.2 T7,
AZ301953.1*u SP6		  
18 RP11-10G8 R 18q11.2c(NCI)
 chr18 17Mb   AFMA052YG1 B71705.1 SP6,
B71706.1 T7		  
18 RP11-59E12 R 18q11.2d(NCI)
 chr18 19Mb   AFM164ZC1 BZ749165.1 T7,
AQ198120.1 ,
BZ749164.1 SP6,
AQ198117.1 		 
18 RP11-726L11 C 18q12(FHCRC)
 chr18 31Mb AC090370.3,
AP001394.3		   AQ519096.1*u T7  
18 RP11-79G13 C 18q12(FHCRC)
 chr18 26Mb     AQ283480.1 SP6,
AZ519038.1 SP6,
AQ283483.1 T7		  
18 RP11-79G5 C 18q12(FHCRC)
 chr18 31Mb AC009272.3   AZ520729.1 SP6,
AQ283440.1 SP6,
AQ283443.1 T7		  
18 RP11-90B5 CR 18q12(FHCRC)
18q12.2b~12.2c(NCI)
 chr18 32Mb   AFMA099ZD1 AQ283417.1 SP6,
AZ517972.1 T7,
AQ283420.1 T7		  
18 RP11-94G7 C 18q12(FHCRC)
 chr15 26Mb   SHGC-14317*u AQ313758.1 SP6,
AQ313761.1 T7		  
18 RP11-159D14 C 18q12~21(FHCRC)
 chr18 48Mb     AQ373476.1 T7,
AQ373473.1 SP6		  
18 RP11-687E1 C 18q12~21(FHCRC)
 chr18 37Mb AC087683.5,
AP002390.2		   AQ410296.1 T7  
18 RP11-747O10 C 18q12~21(FHCRC)
 chr18 43Mb AP002785.1   AQ617868.1*u SP6  
18 RP11-7O6 C 18q12~21(FHCRC)
 chr18 45Mb AC011011.4   B71380.1 SP6,
B71381.1 T7		  
18 RP11-90E1 C 18q12~21(FHCRC)
 chr18 39Mb     AQ281484.1 SP6,
AZ517903.1 T7		  
18 RP11-111H24 R 18q12.1b(NCI)
 chr18 23Mb   AFMA054TD1 AQ319809.1 SP6,
AQ342030.1 T7		  
18 RP11-19F14 R 18q12.1e(NCI)
 chr18 28Mb   AFM238VB6, AFM238VB6*u B82984.1 T7,
CG734319.1 T7,
CG734318.1 SP6,
BZ749080.1 SP6		  
18 RP11-63N12 R 18q12.1g(NCI)
 chr18 30Mb   AFMC006XF1 AQ238540.1 T7,
AQ238539.1 SP6		  
18 RP11-104N11 R 18q12.2d(NCI)
 chr18 33Mb   AFM298WF9, AFM298WF9*u AQ314013.1 T7,
AQ314010.1 SP6		  
18 RP11-20A13 C 18q12.3(FHCRC)
 chr18 41Mb AC013659.3   B92222.1 SP6,
B85567.1*u T7		  
18 RP11-89M10 C 18q12.3(FHCRC)
 chr18 37Mb     AQ283397.1 SP6,
AQ283400.1 T7		  
18 RP11-91K12 C 18q12.3~21.1(FHCRC)
 chr18 42Mb     AQ282637.1 SP6,
AQ282639.1 T7		  
18 RP11-265I6 R 18q12.3b(NCI)
 chr18 35Mb   AFMA074YD9 AQ491099.1 T7,
AQ491097.1 SP6		  
18 RP11-19L3 R 18q21.1a~21.1b(NCI)
 chr18 42Mb   AFM256VD5, AFM256VD5*u BZ749082.1 T7,
BZ749081.1 SP6		  
18 RP11-80P2 C 18q21.1(FHCRC)
 chr18 44Mb     AQ317844.1 SP6  
18 RP11-170E9 C 18q21.1~21.2(FHCRC)
 chr9 133Mb   SHGC-10187 AQ416621.1 SP6  
18 RP11-54A1 C 18q21.1~21.2(FHCRC)
 chr18 46Mb AC015864.5   AQ081542.1  
18 RP11-100M22 C 18q21(FHCRC)
 chr20 3Mb AC068569.3 AA448755 AQ322309.1*d T7,
AQ344575.1*d SP6		 multiple_placements_on_genome
18 RP11-100M22 C 18q21(FHCRC)
 chr18 46Mb AC068569.3*d AA448755*d AQ322309.1 T7,
AQ344575.1 SP6		 multiple_placements_on_genome
18 RP11-91H23 C 18q21(FHCRC)
         AZ519324.1*u T7  
18 RP11-20H17 R 18q21.1d~21.1e(NCI)
 chr18 44Mb   AFMB043WG1 B88779.1 SP6,
B85661.1 T7		  
18 RP11-43K24 R 18q21.1g(NCI)
 chr18 45Mb   AFM292WG1, AFM046XF6*u AQ199571.1 ,
BZ749134.1 T7,
BZ749133.1 SP6,
AQ199570.1 		 
18 RP11-186B13 C 18q21.2(FHCRC)
 chr18 49Mb AC026839.7   AQ421810.1 T7,
AQ421799.1 SP6		  
18 RP11-729G3 C 18q21.2(FHCRC)
 chr18 46Mb AC091551.14,
AP001374.3		   AQ456835.1 SP6,
AQ455428.1 T7		  
18 RP11-79L5 C 18q21.2(FHCRC)
 chr18 53Mb     AQ284950.1 SP6,
AQ284954.1 T7		  
18 RP11-89B14 C 18q21.2(FHCRC)
 chr18 49Mb     AQ285697.1 T7,
AQ285695.1*u SP6		  
18 RP11-160B24 R 18q21.2d(NCI)
 chr18 51Mb   AFM248YF1, AFM248YF1*u AQ377611.1 T7,
CG734321.1 T7,
CG734320.1 SP6		  
18 RP11-153B11 R 18q21.31a~21.31b(NCI)
 chr18 52Mb   AFMA054YG5 AQ387999.1 SP6,
AQ388001.1 T7		  
18 RP11-4G8 R 18q21.31~21.32(NCI)
 chr18 54Mb   AFMB317ZC1 B48040.1 SP6,
CG734256.1 T7,
BZ749144.1 T7		  
18 RP11-88J4 C 18q21.3~22(FHCRC)
 chr18 56Mb     AQ280959.1 SP6,
AQ280961.1 T7		  
18 RP11-90B3 C 18q21.3~22(FHCRC)
 chr18 60Mb     AQ283414.1 T7,
AQ283411.1 SP6,
AZ517969.1*u T7		  
18 RP11-12J12 R 18q21.32a(NCI)
 chr18 55Mb   AFMA337WC9 B75846.1 SP6,
BZ749032.1 SP6,
BZ749033.1 T7		  
18 RP11-40D15 R 18q21.32b~21.32c(NCI)
 chr18 56Mb   AFMB330ZC5 CG734258.1 T7,
BZ749130.1 T7,
CG734257.1 SP6		  
18 RP11-15C15 R 18q21.32c~21.33a(NCI)
 chr18 57Mb   AFMA052VA9 BZ749047.1 SP6,
BZ749048.1 T7,
B76365.1 T7		  
18 RP11-75O12 R 18q21.33b(NCI)
 chr18 59Mb   AFM248YB9, AFM248YB9*u AQ268212.1 T7,
AQ268209.1 SP6		  
18 RP11-90A21 C 18q22.1(FHCRC)
 chr18 59Mb     AQ281403.1 T7,
AQ281400.1 SP6		  
18 RP11-299P2 C 18q22(FHCRC)
 chr18 58Mb AC022726.13 RH68699 AZ515657.2 T7,
AQ506364.1 T7,
AZ515658.2 SP6		  
18 RP11-64C15 C 18q22(FHCRC)
 chr18 65Mb     AQ238644.1 SP6,
AQ238646.1 T7		  
18 RP11-793J2 C 18q22(FHCRC)
 chr18 59Mb AC009802.13   AQ521190.1 SP6,
AQ468553.1*u T7		  
18 RP11-79A24 C 18q22(FHCRC)
 chr18 64Mb     AQ282419.1 SP6,
AQ282422.1 T7,
AQ628786.1 T7		  
18 RP11-88B2 C 18q22(FHCRC)
 chr18 61Mb AC080101.2   AQ286012.1 SP6,
AZ516095.1 T7,
AQ286014.1 T7		  
18 RP11-89I22 C 18q22(FHCRC)
 chr18 60Mb     AQ282913.1 SP6,
AQ282914.1 T7		  
18 RP11-90A7 C 18q22(FHCRC)
 chr18 64Mb AC027776.2   AZ517884.1 T7,
AQ286802.1 T7,
AQ286799.1 SP6		  
18 RP11-91H13 C 18q22(FHCRC)
 chr18 57Mb     AZ519315.1 T7,
AQ283407.1 T7,
AQ283404.1 SP6		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 RP11-3K7 R 18q22.1b~22.1c(NCI)
 chr18 61Mb AC010782.1*u AFM324WC9, AFM324WC9*u B47942.1 T7,
B47941.1 SP6		  
18 RP11-105L16 R 18q22.1e~22.1f(NCI)
 chr18 64Mb   AFM094YE5 AQ319765.1 SP6,
AQ319768.1 T7		  
18 RP11-49H23 R 18q22.2(NCI)
 chr18 64Mb   AFMB326XG9 AQ053059.1 ,
BZ749141.1 T7,
BZ749140.1 SP6,
AQ060575.1 		 
18 RP11-57F7 R 18q22.3a~22.3b(NCI)
 chr18 66Mb   AFMB304YB9 AQ115997.1 ,
BZ749158.1 SP6,
BZ749159.1 T7,
AQ115996.1 		 
18 RP11-89N12 18q22.3(FHCRC)
 chr18 69Mb     AQ286649.1 T7  
18 RP11-53N15 R 18q22.3c~22.3d(NCI)
 chr18 70Mb   AFM164XE3, AFM164XE3*u BZ749153.1 T7,
BZ749152.1 SP6,
AQ051927.1*u 		 
18 RP11-315M18 C 18q23(FHCRC)
 chr18 75Mb AC013563.6   AZ520620.1 T7,
AQ504631.1*u SP6		  
18 RP11-61A18 CR 18q23(FHCRC)
18q23b(NCI)
 chr18 72Mb   AFMA037ZC9 AQ200841.1 ,
BZ749171.1 T7,
BZ749170.1 SP6,
AQ200845.1 		 
18 RP11-89N1 C 18q23(FHCRC)
 chr18 75Mb     AQ284869.1 T7,
AQ284866.1 SP6		  
18 RP11-90L15 C 18q23(FHCRC)
 chr18 68Mb     AQ284510.1 SP6,
AZ518585.1 T7,
AQ284511.1 T7		  
18 RP11-90L3 C 18q23(FHCRC)
 chr18 73Mb     AQ284479.1 SP6,
AZ518561.1 T7,
AQ284481.1 T7		  
18 RP11-91C19 C 18q23(FHCRC)
 chr18 75Mb     AQ286360.1 SP6,
AQ286371.1 T7		  
18 RP11-4B17 R 18q23b~23c(NCI)
 chr18 72Mb   AFM029XC9 B48935.1 SP6,
B48936.1*u T7		  
18 RP11-130J1 R 18q23c(NCI)
 chr18 73Mb   AFMB015XF5 BZ749038.1 SP6,
BZ749039.1 T7		  
18 RP11-7H17 R 18q23c~23d(NCI)
 chr18 75Mb   AFMA131WH5 B72057.1 SP6,
AZ520043.1 T7		  
18 RP11-87C15 R 18q23d(NCI)
 chr18 75Mb   AFM254VD5, AFM254VD5*u BZ749195.1 T7,
BZ749194.1 SP6		  
total113C:70 R:45 S:1113108 3649113 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.