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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 RP11-324G2 C 18p11.3(FHCRC)
 chr18 0Mb AC016128.4      
18 RP11-694N4 C 18p11.3(FHCRC)
 chr18 3Mb AP002471.2   AQ496520.1*u SP6  
18 RP11-778P8 C 18p11.3(FHCRC)
 chr18 0Mb AC021474.3   AQ461822.1*u T7  
18 RP11-29P22 C 18p11.2~11.3(FHCRC)
 chr18 9Mb AC021927.3   AQ003179.1 SP6,
B87659.1 T7		  
18 RP11-752I11 C 18p11.2~11.3(FHCRC)
 chr18 5Mb AP001019.2   AQ511037.1 T7,
AQ499120.1 SP6		  
18 RP11-91I8 C 18p11.2~11.3(FHCRC)
 chr18 6Mb AP005205.3   AQ282471.1 T7,
AQ282470.1 SP6		  
18 RP11-55N14 R 18p11.32a(NCI)
 chr18 2Mb AC015958.3 AFMA175YE9 AQ082341.1 ,
AQ115890.1 		 
18 RP11-106J7 R 18p11.31e~11.32a(NCI)
 chr18 3Mb AC015945.3 D18S63, AFM205TD6 AQ317978.1 T7,
AQ317975.1 SP6,
BZ749025.1 SP6,
BZ749026.1*u T7		  
18 RP11-411B10 C 18p11.2(FHCRC)
 chr18 13Mb AC006557.2      
18 RP11-44O1 C 18p11.2(FHCRC)
 chr18 12Mb AC007734.4   AQ196159.1  
18 RP11-683E17 C 18p11.2(FHCRC)
 chr18 8Mb AP000899.4 AA699697*d, AI351740*d   multiple_placements_on_genome
18 RP11-683E17 C 18p11.2(FHCRC)
 chr6 31Mb AP000899.4*d AA699697, AI351740   multiple_placements_on_genome
18 RP11-808F20 C 18p11.2(FHCRC)
 chr18 13Mb AP001268.2   AQ524075.1 T7,
AQ525090.1 SP6		  
18 RP11-720L3 C 18p11.1~11.2(FHCRC)
 chr18 13Mb AP001525.6   AQ615608.1 SP6,
AQ615466.1 T7		  
18 RP11-7E5 R 18p11.22a(NCI)
 chr18 10Mb AC016067.2*u D18S1158 BZ749185.1 T7,
BZ749184.1 SP6		  
18 RP11-18K7 C 18q11.1~11.2(FHCRC)
 chr18 17Mb AC009669.5   B85505.1 SP6,
B85506.1 T7		  
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
 chr18 23Mb AC009442.4*d,
AC107296.4*d		   AQ282194.1 SP6,
B63175.1 T7		 multiple_placements_on_genome
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
 chr3 190Mb AC009442.4,
AC107296.4		   B63175.1*d T7,
AQ282194.1*d SP6		 multiple_placements_on_genome
18 RP11-10L24 C 18q11.2(FHCRC)
 chr18 20Mb AC009668.6   B72957.1 SP6,
AZ520943.1*u T7		  
18 RP11-675J9 C 18q11.2(FHCRC)
 chr18 37Mb AP002894.1, AC090760.1*d     multiple_placements_on_genome
18 RP11-675J9 C 18q11.2(FHCRC)
 chr18 22Mb AC090760.1, AP002894.1*d     multiple_placements_on_genome
18 RP11-676D16 R 18q11.2(FHCRC)
 chr18 23Mb AC087383.1   AQ410056.1 SP6,
AQ611042.1 T7		  
18 RP11-789C17 C 18q11.2(FHCRC)
 chr18 8Mb AP001094.6   AQ462496.1 SP6  
18 RP11-799B12 C 18q11.2(FHCRC)
 chr18 19Mb AC090772.9,
AP001177.3		   AQ556168.1 T7  
18 RP11-297N1 C 18q11.2~12(FHCRC)
 chr18 24Mb AC027736.2*u   AQ505129.1 T7,
AQ505126.1 SP6		  
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chr18 22Mb AC010854.3 RH18229 AZ301833.2 SP6,
AQ528551.1 SP6,
AQ528554.1 T7,
AZ301832.2 T7		 multiple_placements_on_genome
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chrY 57Mb AC010854.3*d RH18229*d AZ301832.2 T7,
AQ528554.1 T7,
AZ301833.2*d SP6,
AQ528551.1*d SP6		 multiple_placements_on_genome
18 RP11-552O4 C 18q11.2~12(FHCRC)
 chr18 22Mb AC018371.10 RH26115 AZ301948.2 T7,
AZ301953.1*u SP6		  
18 RP11-726L11 C 18q12(FHCRC)
 chr18 31Mb AC090370.3,
AP001394.3		   AQ519096.1*u T7  
18 RP11-79G5 C 18q12(FHCRC)
 chr18 31Mb AC009272.3   AZ520729.1 SP6,
AQ283440.1 SP6,
AQ283443.1 T7		  
18 RP11-687E1 C 18q12~21(FHCRC)
 chr18 37Mb AC087683.5,
AP002390.2		   AQ410296.1 T7  
18 RP11-747O10 C 18q12~21(FHCRC)
 chr18 43Mb AP002785.1   AQ617868.1*u SP6  
18 RP11-7O6 C 18q12~21(FHCRC)
 chr18 45Mb AC011011.4   B71380.1 SP6,
B71381.1 T7		  
18 RP11-20A13 C 18q12.3(FHCRC)
 chr18 41Mb AC013659.3   B92222.1 SP6,
B85567.1*u T7		  
18 RP11-54A1 C 18q21.1~21.2(FHCRC)
 chr18 46Mb AC015864.5   AQ081542.1  
18 RP11-100M22 C 18q21(FHCRC)
 chr20 3Mb AC068569.3 AA448755 AQ322309.1*d T7,
AQ344575.1*d SP6		 multiple_placements_on_genome
18 RP11-100M22 C 18q21(FHCRC)
 chr18 46Mb AC068569.3*d AA448755*d AQ322309.1 T7,
AQ344575.1 SP6		 multiple_placements_on_genome
18 RP11-866E20 C 18q21~22(FHCRC)
 chr18 55Mb AC090377.15,
AP001549.3		      
18 RP11-186B13 C 18q21.2(FHCRC)
 chr18 49Mb AC026839.7   AQ421810.1 T7,
AQ421799.1 SP6		  
18 RP11-729G3 C 18q21.2(FHCRC)
 chr18 46Mb AC091551.14,
AP001374.3		   AQ456835.1 SP6,
AQ455428.1 T7		  
18 RP11-858M6 C 18q21.2(FHCRC)
 chr18 46Mb AC090395.3,
AP001499.4		      
18 RP11-299P2 C 18q22(FHCRC)
 chr18 58Mb AC022726.13 RH68699 AZ515657.2 T7,
AQ506364.1 T7,
AZ515658.2 SP6		  
18 RP11-495C15 C 18q22(FHCRC)
 chr18 59Mb AC009267.15      
18 RP11-793J2 C 18q22(FHCRC)
 chr18 59Mb AC009802.13   AQ521190.1 SP6,
AQ468553.1*u T7		  
18 RP11-88B2 C 18q22(FHCRC)
 chr18 61Mb AC080101.2   AQ286012.1 SP6,
AZ516095.1 T7,
AQ286014.1 T7		  
18 RP11-90A7 C 18q22(FHCRC)
 chr18 64Mb AC027776.2   AZ517884.1 T7,
AQ286802.1 T7,
AQ286799.1 SP6		  
18 RP11-304M13 C 18q22~23(FHCRC)
     AC026964.4*u AA918328*u    
18 RP11-504H5 C 18q22~23(FHCRC)
 chr18 70Mb AC008021.10      
18 RP11-3K7 R 18q22.1b~22.1c(NCI)
 chr18 61Mb AC010782.1*u AFM324WC9, AFM324WC9*u B47942.1 T7,
B47941.1 SP6		  
18 RP11-196B3 C 18q23(FHCRC)
 chr18 75Mb AC018445.21      
18 RP11-315M18 C 18q23(FHCRC)
 chr18 75Mb AC013563.6   AZ520620.1 T7,
AQ504631.1*u SP6		  
total46C:41 R:5 S:04645 461036 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.