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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 CTB-74G18 18pter(UChicago)
 chr18 0Mb   D18S552    
18 RP11-88C10 CR 18p11.32c(FHCRC)
18p11.32c(NCI)
 chr18 0Mb   AFM178XC3, 45002*u, AFM016YC5*u, 14236*u, AFM016YC5*u, AFM178XC3*u CG734315.1 T7,
BZ749196.1 SP6,
CG734314.1 SP6		  
18 CTA-390E4 R 18p11.32(CSMC)
 chr18 2Mb   AFMA175YE9, MR12029    
18 CTA-186D6 R 18p11.32~11.31(CSMC)
 chr18 3Mb   D18S63    
18 RP11-78H1 R 18p11.32a~11.32b(NCI)
 chr18 2Mb   AFM299YF1, AFM299YF1*u AQ286480.1 T7,
AQ286478.1 SP6		  
18 RP11-55N14 R 18p11.32a(NCI)
 chr18 2Mb AC015958.3 AFMA175YE9 AQ082341.1 ,
AQ115890.1 		 
18 RP11-106J7 R 18p11.31e~11.32a(NCI)
 chr18 3Mb AC015945.3 D18S63, AFM205TD6 AQ317978.1 T7,
AQ317975.1 SP6,
BZ749025.1 SP6,
BZ749026.1*u T7		  
18 RP11-106O1 R 18p11.31e(NCI)
 chr18 3Mb   AFM080XD7, AFM080XD7*u CG734316.1 SP6,
CG734317.1 T7		  
18 CTA-391E4 R 18p11.31~11.2(CSMC)
 chr18 0Mb   D18S1240    
18 CTA-787F7 R 18p11.31~11.2(CSMC)
       D18S1241*u    
18 RP11-113J12 R 18p11.31d(NCI)
 chr18 3Mb   AFM238YD8, AFM238YD8*u AQ343331.1 SP6,
AQ343333.1 T7		  
18 RP11-102E12 R 18p11.31d~11.31c(NCI)
 chr18 4Mb   AFMB329WD5 AQ312325.1 SP6,
AQ312328.1 T7		  
18 RP11-105C15 R 18p11.31c(NCI)
 chr18 5Mb   AFM283XG9 AQ316136.1 SP6,
AQ316138.1 T7		  
18 CTB-9L17 R 18p11.2(CSMC)
 chr18 10Mb   D18S1158    
18 RP11-683E17 C 18p11.2(FHCRC)
 chr18 8Mb AP000899.4 AA699697*d, AI351740*d   multiple_placements_on_genome
18 RP11-683E17 C 18p11.2(FHCRC)
 chr6 31Mb AP000899.4*d AA699697, AI351740   multiple_placements_on_genome
18 RP11-102O20 R 18p11.22c(NCI)
 chr18 9Mb   AFM259VH9, AFM259VH9*u AQ313383.1 T7,
AQ313380.1 SP6		  
18 RP11-67I20 R 18p11.22b~11.22c(NCI)
 chr18 9Mb   AFMA054YG9 BZ749177.1 T7,
AQ239191.1 T7,
CG734255.1 T7,
CG734254.1 SP6		  
18 RP11-24G5 R 18p11.22b(NCI)
 chr18 10Mb   AFMA053WD1 B84417.1 SP6,
AQ013368.1 ,
B84418.1 T7		  
18 RP11-7E5 R 18p11.22a(NCI)
 chr18 10Mb AC016067.2*u D18S1158 BZ749185.1 T7,
BZ749184.1 SP6		  
18 RP11-151D11 R 18p11.21e(NCI)
 chr18 13Mb   AFM266WA5, AFM266WA5*u AQ378182.1 SP6,
BZ749045.1 SP6,
BZ749046.1 T7		  
18 RP11-16A21 CR 18p11.21b(FHCRC)
18p11.21b(NCI)
 chr18 12Mb   AFM254YD5, AFM254YD5*u BZ749051.1 SP6,
BZ749052.1 T7		  
18 RP11-96I11 R 18p11.21a(NCI)
 chr18 12Mb   AFM214XD2 BZ749202.1 SP6,
BZ749203.1 T7,
AQ317713.1*u SP6		  
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chr18 22Mb AC010854.3 RH18229 AZ301833.2 SP6,
AQ528551.1 SP6,
AQ528554.1 T7,
AZ301832.2 T7		 multiple_placements_on_genome
18 RP11-349N23 C 18q11.2~12(FHCRC)
 chrY 57Mb AC010854.3*d RH18229*d AZ301832.2 T7,
AQ528554.1 T7,
AZ301833.2*d SP6,
AQ528551.1*d SP6		 multiple_placements_on_genome
18 RP11-552O4 C 18q11.2~12(FHCRC)
 chr18 22Mb AC018371.10 RH26115 AZ301948.2 T7,
AZ301953.1*u SP6		  
18 RP11-10G8 R 18q11.2c(NCI)
 chr18 17Mb   AFMA052YG1 B71705.1 SP6,
B71706.1 T7		  
18 RP11-59E12 R 18q11.2d(NCI)
 chr18 19Mb   AFM164ZC1 BZ749165.1 T7,
AQ198120.1 ,
BZ749164.1 SP6,
AQ198117.1 		 
18 RP11-90B5 CR 18q12(FHCRC)
18q12.2b~12.2c(NCI)
 chr18 32Mb   AFMA099ZD1 AQ283417.1 SP6,
AZ517972.1 T7,
AQ283420.1 T7		  
18 RP11-94G7 C 18q12(FHCRC)
 chr15 26Mb   SHGC-14317*u AQ313758.1 SP6,
AQ313761.1 T7		  
18 CTB-16H3 R 18q12~21(CSMC)
 chr18 32Mb   AFMA099ZD1    
18 RP11-111H24 R 18q12.1b(NCI)
 chr18 23Mb   AFMA054TD1 AQ319809.1 SP6,
AQ342030.1 T7		  
18 RP11-19F14 R 18q12.1e(NCI)
 chr18 28Mb   AFM238VB6, AFM238VB6*u B82984.1 T7,
CG734319.1 T7,
CG734318.1 SP6,
BZ749080.1 SP6		  
18 RP11-63N12 R 18q12.1g(NCI)
 chr18 30Mb   AFMC006XF1 AQ238540.1 T7,
AQ238539.1 SP6		  
18 CTB-47K14 R 18q12.2~12.3(CSMC)
 chr18 33Mb   AFMA083XE5    
18 CTB-4A11 R 18q12.2~12.3(CSMC)
 chr18 33Mb   AFMA083XE5    
18 CTB-4B12 R 18q12.2~12.3(CSMC)
 chr18 33Mb   AFMA083XE5    
18 RP11-104N11 R 18q12.2d(NCI)
 chr18 33Mb   AFM298WF9, AFM298WF9*u AQ314013.1 T7,
AQ314010.1 SP6		  
18 RP11-87H5 C 18q12.3(FHCRC)
 chr18 38Mb   AFM240VH6    
18 RP11-265I6 R 18q12.3b(NCI)
 chr18 35Mb   AFMA074YD9 AQ491099.1 T7,
AQ491097.1 SP6		  
18 RP11-19L3 R 18q21.1a~21.1b(NCI)
 chr18 42Mb   AFM256VD5, AFM256VD5*u BZ749082.1 T7,
BZ749081.1 SP6		  
18 CTA-533G4 R 18q21.1(CSMC)
 chr18 43Mb   D18S1137    
18 CTB-15N14 R 18q21.1~21.2(CSMC)
 chr18 44Mb   AFMB043WG1    
18 CTB-45M3 R 18q21.1~21.2(CSMC)
 chr18 48Mb   D18S484    
18 CTB-51O16 R 18q21.1~21.2(CSMC)
 chr18 47Mb   AFMA203YF9    
18 RP11-170E9 C 18q21.1~21.2(FHCRC)
 chr9 133Mb   SHGC-10187 AQ416621.1 SP6  
18 RP11-100M22 C 18q21(FHCRC)
 chr20 3Mb AC068569.3 AA448755 AQ322309.1*d T7,
AQ344575.1*d SP6		 multiple_placements_on_genome
18 RP11-100M22 C 18q21(FHCRC)
 chr18 46Mb AC068569.3*d AA448755*d AQ322309.1 T7,
AQ344575.1 SP6		 multiple_placements_on_genome
18 RP11-20H17 R 18q21.1d~21.1e(NCI)
 chr18 44Mb   AFMB043WG1 B88779.1 SP6,
B85661.1 T7		  
18 RP11-43K24 R 18q21.1g(NCI)
 chr18 45Mb   AFM292WG1, AFM046XF6*u AQ199571.1 ,
BZ749134.1 T7,
BZ749133.1 SP6,
AQ199570.1 		 
18 CTD-2070A5 C 18q21.2(FHCRC)
 chr18 49Mb   Hs.211567    
18 RP11-160B24 R 18q21.2d(NCI)
 chr18 51Mb   AFM248YF1, AFM248YF1*u AQ377611.1 T7,
CG734321.1 T7,
CG734320.1 SP6		  
18 RP11-153B11 R 18q21.31a~21.31b(NCI)
 chr18 52Mb   AFMA054YG5 AQ387999.1 SP6,
AQ388001.1 T7		  
18 RP11-4G8 R 18q21.31~21.32(NCI)
 chr18 54Mb   AFMB317ZC1 B48040.1 SP6,
CG734256.1 T7,
BZ749144.1 T7		  
18 CTA-400C8 R 18q21.3(CSMC)
 chr18 59Mb   RH55491    
18 RP11-12J12 R 18q21.32a(NCI)
 chr18 55Mb   AFMA337WC9 B75846.1 SP6,
BZ749032.1 SP6,
BZ749033.1 T7		  
18 RP11-40D15 R 18q21.32b~21.32c(NCI)
 chr18 56Mb   AFMB330ZC5 CG734258.1 T7,
BZ749130.1 T7,
CG734257.1 SP6		  
18 RP11-15C15 R 18q21.32c~21.33a(NCI)
 chr18 57Mb   AFMA052VA9 BZ749047.1 SP6,
BZ749048.1 T7,
B76365.1 T7		  
18 RP11-75O12 R 18q21.33b(NCI)
 chr18 59Mb   AFM248YB9, AFM248YB9*u AQ268212.1 T7,
AQ268209.1 SP6		  
18 CTB-50P2 R 18q22(CSMC)
 chr18 55Mb   AFMA065YE9    
18 RP11-299P2 C 18q22(FHCRC)
 chr18 58Mb AC022726.13 RH68699 AZ515657.2 T7,
AQ506364.1 T7,
AZ515658.2 SP6		  
18 RP11-304M13 C 18q22~23(FHCRC)
     AC026964.4*u AA918328*u    
18 RP11-3K7 R 18q22.1b~22.1c(NCI)
 chr18 61Mb AC010782.1*u AFM324WC9, AFM324WC9*u B47942.1 T7,
B47941.1 SP6		  
18 RP11-105L16 R 18q22.1e~22.1f(NCI)
 chr18 64Mb   AFM094YE5 AQ319765.1 SP6,
AQ319768.1 T7		  
18 RP11-49H23 R 18q22.2(NCI)
 chr18 64Mb   AFMB326XG9 AQ053059.1 ,
BZ749141.1 T7,
BZ749140.1 SP6,
AQ060575.1 		 
18 RP11-57F7 R 18q22.3a~22.3b(NCI)
 chr18 66Mb   AFMB304YB9 AQ115997.1 ,
BZ749158.1 SP6,
BZ749159.1 T7,
AQ115996.1 		 
18 RP11-53N15 R 18q22.3c~22.3d(NCI)
 chr18 70Mb   AFM164XE3, AFM164XE3*u BZ749153.1 T7,
BZ749152.1 SP6,
AQ051927.1*u 		 
18 CTB-53L21 R 18q23(CSMC)
 chr18 73Mb   AFMB015XF5    
18 RP11-61A18 CR 18q23(FHCRC)
18q23b(NCI)
 chr18 72Mb   AFMA037ZC9 AQ200841.1 ,
BZ749171.1 T7,
BZ749170.1 SP6,
AQ200845.1 		 
18 RP11-4B17 R 18q23b~23c(NCI)
 chr18 72Mb   AFM029XC9 B48935.1 SP6,
B48936.1*u T7		  
18 RP11-130J1 R 18q23c(NCI)
 chr18 73Mb   AFMB015XF5 BZ749038.1 SP6,
BZ749039.1 T7		  
18 RP11-7H17 R 18q23c~23d(NCI)
 chr18 75Mb   AFMA131WH5 B72057.1 SP6,
AZ520043.1 T7		  
18 RP11-87C15 R 18q23d(NCI)
 chr18 75Mb   AFM254VD5, AFM254VD5*u BZ749195.1 T7,
BZ749194.1 SP6		  
total70C:14 R:59 S:07068 107049 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.