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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
19 CTD-3193O13 R 19p13.3(FHCRC)
 chr19 7Mb AC010336.8   AQ173542.1 SP6,
AQ302052.1 T7		  
19 RP11-268O21 CR 19p13.3(FHCRC)
19p13.3e(NCI)
 chr19 2Mb AC024721.5   AQ490667.1 SP6,
AQ490670.1 T7		  
19 RP11-383B15 C 19p13.3(FHCRC)
 chr19 3Mb AC068475.2   AQ549801.1 T7  
19 RP11-49M3 C 19p13.3(FHCRC)
 chr19 2Mb   AFMA052WB9 AQ052937.1 SP6  
19 RP11-54G9 C 19p13.3(FHCRC)
 chr19 3Mb   AFMA132ZB9 AQ082000.1  
19 RP11-75H6 C 19p13.3(FHCRC)
 chr19 0Mb   AFMA310WD9 AQ266693.1 SP6,
AQ266694.1 T7		  
19 RP11-30F17 C 19p13.2~13.3(FHCRC)
 chr19 6Mb AC016331.2 T99639 B87761.1 T7,
B87760.1 SP6		  
19 RP11-79A10 C 19p13.2~13.3(FHCRC)
 chr19 3Mb     AZ519137.1 SP6,
AQ282378.1 SP6		  
19 RP11-565J3 R 19p13.3a(NCI)
 chr19 5Mb AC021165.4   CL423256.1 T7  
19 CTD-2231E14 R 19p13.2(UCSF)
 chr19 16Mb AC008894.9   AQ146440.1 T7,
AQ235672.1 SP6		  
19 RP11-1137G4 CR 19p13.2(FHCRC)
19p13.2d(NCI)
 chr19 6Mb AC025278.5   AQ733707.1*u T7  
19 RP11-197O4 CR 19p13.2(FHCRC)
19p13.2a(NCI)
 chr19 10Mb AC024182.2   CL423283.1 SP6,
CL423288.1 T7		  
19 RP11-19I2 C 19p13.2(FHCRC)
 chr19 11Mb AC067963.3 AFMB055ZC9 B89545.1 SP6,
B81964.1 T7		  
19 RP11-31N2 C 19p13.2(FHCRC)
 chr19 12Mb   AFM224YE9, AFM224YE9*u, AFM224YE9*u AQ046697.1  
19 RP11-79F15 C 19p13.2(FHCRC)
 chr19 8Mb     AQ284164.1 SP6,
AQ284166.1 T7		  
19 RP11-841N21 C 19p13.2(FHCRC)
 chr19 9Mb     AQ817689.1 SP6,
AQ826904.1 T7		  
19 RP11-91O21 C 19p13.2(FHCRC)
 chr19 10Mb     AQ283439.1 T7,
AQ283436.1 SP6		  
19 RP11-151O22 C 19p13.1~13.2(FHCRC)
 chr19 12Mb AC009038.5*u H65733 AQ378138.1 SP6,
AQ378140.1 T7		  
19 RP11-121I1 C 19p13.1(FHCRC)
 chr19 16Mb   AFMA302YA5 AQ342941.1 T7,
AQ342938.1 SP6		  
19 RP11-451E20 C 19p13.1(FHCRC)
 chr19 16Mb     AQ583200.1 SP6,
AQ583204.1 T7		  
19 RP11-622A12 C 19p13.1(FHCRC)
 chr19 15Mb     AQ370399.1 T7  
19 RP11-56K21 C 19p13.12(FHCRC)
 chr19 14Mb   AFM256YC9, AFM256YC9*u AQ082970.1 ,
AQ115263.1 		 
19 RP11-413M18 R 19p13.11e(NCI)
 chr19 16Mb AC021138.4   CL423226.1 SP6,
CL423232.1 T7		  
19 CTD-3149D2 R 19p13.11d(NCI)
 chr19 17Mb AC008761.8   AQ805530.1*u SP6  
19 RP11-79E22 C 19p12(FHCRC)
 chr19 17Mb     AQ629606.1 T7,
AQ282631.1 T7,
AZ519162.1 SP6,
AQ581335.1 SP6,
AQ282629.1 SP6		  
19 RP11-89H20 C 19p12(FHCRC)
         AQ285926.1*u SP6,
AZ517867.1*u T7		  
19 RP11-89N18 C 19p12(FHCRC)
 chr19 24Mb     AQ286661.1 T7,
AQ286659.1*u SP6		  
19 RP11-91L5 C 19p12(FHCRC)
 chr19 19Mb     AQ284140.1 SP6  
19 RP11-157B13 R 19p12b(NCI)
 chr19 22Mb AC020700.4,
AC073539.3		 SHGC-34357*u AQ373544.1 T7,
AQ373542.1 SP6		  
19 RP11-110J19 C 19p11~19q11(FHCRC)
 chr19 34Mb   AFMB332XE5 AQ318985.1 T7,
AQ350755.1 SP6		  
19 RP11-152P7 C 19q11~12(FHCRC)
 chr19 33Mb   AFM234VB2, AFM234VB2*u AQ385035.1 SP6  
19 RP11-147D7 CS 19q11~13.11(SC)
19q12~13.1(FHCRC)
 chr19 37Mb   AFM248ZC1, AFM248ZC1*u AQ373536.1 SP6  
19 RP11-18J6 C 19q12(FHCRC)
 chr19 36Mb   AFM295XG9, AFM295XG9*u B81905.1 T7  
19 RP11-451E12 C 19q12(FHCRC)
 chr19 34Mb     AQ583168.1 SP6,
AQ583172.1 T7		  
19 RP11-79M11 C 19q12(FHCRC)
 chr19 36Mb     AQ282311.1 T7,
AZ519110.1 SP6,
AQ317616.1 SP6		  
19 RP11-46I12 C 19q12~13.1(FHCRC)
 chr19 34Mb   AFM269XG5, AFM269XG5*u AQ201106.1 ,
AQ201108.1 		 
19 RP11-17N20 R 19q12b(NCI)
 chr19 35Mb AC011883.4   B82807.1 SP6,
B82808.1*u T7		  
19 RP11-14D17 R 19q12c(NCI)
 chr19 36Mb AC011590.6   B82262.1 SP6,
B87955.1 T7		  
19 RP11-79K6 C 19q13.1(FHCRC)
 chr19 46Mb     AQ283158.1 T7,
AQ629664.1 T7,
AZ519182.1*u SP6		  
19 RP11-91H20 C 19q13.1(FHCRC)
 chr19 43Mb   AFM214YF12 AQ285218.1 T7,
AQ285215.1 SP6		  
19 RP11-92J4 C 19q13.1(FHCRC)
 chr19 41Mb   AFM240VC1, AFM240VC1*u AQ281143.1 SP6  
19 RP11-31D10 R 19q13.11b(NCI)
 chr19 39Mb AC018791.3   AQ046108.1 ,
AQ081490.1 		 
19 RP11-118P21 C 19q13.12(FHCRC)
 chr19 43Mb   AFMA123XE9 AQ349178.1 T7  
19 RP11-44B13 R 19q13.12b(NCI)
 chr19 42Mb AC009194.9   AQ203056.1 ,
AQ203055.1 		 
19 RP11-9B17 R 19q13.12c(NCI)
 chr19 42Mb AC007676.19   B72491.1 T7,
B72490.1*u SP6		  
19 CTD-2119A22 R 19q13.2(UCSF)
         AQ724405.1*u SP6  
19 CTD-2159N22 R 19q13.2(UCSF)
 chr19 50Mb     AQ663353.1 T7  
19 RP11-126L20 C 19q13.2(FHCRC)
 chr19 50Mb   AFM210YG9 AQ349652.1 T7  
19 RP11-133A7 C 19q13.2(FHCRC)
 chr19 45Mb   AFM238WF10 AZ520486.1 SP6  
19 RP11-140E1 C 19q13.2(FHCRC)
 chr19 43Mb   AFMB018WH1 AQ384916.1 SP6,
AQ384918.1 T7		  
19 RP11-168F7 C 19q13.2(FHCRC)
 chr19 48Mb   AFMA050YD5*u AQ421406.1 SP6,
AZ517691.1 T7		  
19 RP11-208I3 C 19q13.2(FHCRC)
 chr19 47Mb   AFMA197XA5 AZ517717.1 SP6  
19 RP11-210C7 C 19q13.2(FHCRC)
 chr19 48Mb   AFMB022ZB9, AFM165XA9, AFM165XA9*u AQ420363.1 T7  
19 RP11-22H18 C 19q13.2(FHCRC)
 chr19 49Mb AC021291.3   B86243.1 SP6,
B86244.1 T7		  
19 RP11-46C6 CR 19q13.2(FHCRC)
19q13.31a(NCI)
 chr19 48Mb AC068785.12 AA425139 AQ199858.1 ,
CL423261.1 T7,
CL423257.1 SP6,
AQ199854.1 		 
19 RP11-21J15 CR 19q13.2(FHCRC)
19q13.31b(NCI)
 chr19 49Mb AC013814.3 AFM329WH1 B85964.1 SP6,
B85965.1 T7		  
19 RP11-2J15 C 19q13.2~13.3(FHCRC)
 chr19 51Mb AC009858.2*u AFM284YG5, AFM284YG5*u B63642.1 T7,
B48575.1 T7,
B63641.1 SP6		  
19 RP11-17I20 C 19q13.3(FHCRC)
 chr19 52Mb AC023094.2*d AFMA133ZH9 B82725.1*d SP6 multiple_placements_on_genome
19 RP11-17I20 C 19q13.3(FHCRC)
 chr19 53Mb AC023094.2 AFMA133ZH9 B82725.1 SP6 multiple_placements_on_genome
19 RP11-39J16 C 19q13.3(FHCRC)
 chr19 54Mb   AFMB002VE1*u AQ029121.1 SP6,
AQ029124.1*u T7		  
19 RP11-79A22 C 19q13.3(FHCRC)
 chr19 50Mb     AQ282416.1 SP6,
AQ580463.1 SP6,
AZ519142.1 SP6		  
19 RP11-79A3 C 19q13.3(FHCRC)
 chr19 57Mb     AZ520660.1 SP6,
AQ281479.1 SP6,
AQ282170.1 T7		  
19 RP11-3N16 C 19q13.3~13.4(FHCRC)
 chr19 53Mb AC011212.3 AA291715 B63839.1 SP6,
B48878.1 T7		  
19 RP11-50I11 CR 19q13.3~13.4(FHCRC)
19q13.33b(NCI)
 chr19 54Mb AC068786.11 AA489700 AQ115178.1 ,
CL423293.1 T7,
CL423289.1 SP6,
AQ053110.1 		 
19 RP11-12C9 C 19q13.4(FHCRC)
 chr19 62Mb   AFM163XF8 B74956.1 SP6  
19 RP11-158G19 C 19q13.4(FHCRC)
 chr19 59Mb AC022318.5   AQ389886.1 T7,
AQ389885.1 SP6		  
19 RP11-35J17 C 19q13.4(FHCRC)
 chr19 58Mb   AFMA083WB5 AQ045816.1 ,
AQ045819.1 		 
19 RP11-61M18 C 19q13.4(FHCRC)
 chr19 58Mb AC079751.1   AQ194314.1 ,
AQ194316.1 		 
19 RP11-795B6 CR 19q13.4(FHCRC)
19q13.41a(NCI)
 chr19 55Mb AC027602.4   AQ467977.1*u T7,
AQ492749.1*u SP6		  
19 RP11-79I16 C 19q13.4(FHCRC)
 chr19 57Mb     AQ581420.1 T7,
AQ283131.1 T7,
AQ283128.1 SP6,
AQ581416.1 SP6		  
19 RP11-81P19 C 19q13.4(FHCRC)
 chr5 158Mb     AZ516083.1 SP6,
AQ282064.1 SP6,
AQ282065.1*d T7,
AZ516085.1*d T7		 multiple_placements_on_genome
19 RP11-81P19 C 19q13.4(FHCRC)
 chr19 57Mb     AQ282065.1 T7,
AZ516085.1 T7,
AQ282064.1*d SP6,
AZ516083.1*d SP6		 multiple_placements_on_genome
19 RP11-89P20 C 19q13.4(FHCRC)
 chr19 57Mb     AQ286768.1 T7,
AQ286765.1*u SP6		  
19 RP11-91D21 C 19q13.4(FHCRC)
 chr5 17Mb     AQ283311.1 T7,
AQ283309.1 SP6		  
19 RP11-91H11 C 19q13.4(FHCRC)
 chr19 63Mb     AQ283401.1 T7,
AQ283398.1 SP6		  
19 RP11-44L20 R 19q13.41b(NCI)
 chr19 58Mb AC015589.4   AQ203126.1 ,
AQ203125.1 		 
19 RP11-45K21 R 19q13.42c~13.43b(NCI)
 chr19 61Mb AC012107.2   AQ200180.1 ,
AQ200181.1 		 
19 RP11-420P11 R 19q13.43b~13.43c(NCI)
 chr19 63Mb AC009763.5   AQ550064.1 T7  
total76C:60 R:23 S:17674 313376 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.