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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
19 CTD-3193O13 R 19p13.3(FHCRC)
chr19 7Mb AC010336.8   AQ173542.1 SP6,
AQ302052.1 T7
 
19 RP11-268O21 CR 19p13.3(FHCRC)
19p13.3e(NCI)
chr19 2Mb AC024721.5   AQ490667.1 SP6,
AQ490670.1 T7
 
19 RP11-383B15 C 19p13.3(FHCRC)
chr19 3Mb AC068475.2   AQ549801.1 T7  
19 RP11-81M8 C 19p13.3(FHCRC)
chr19 1Mb AC104649.1      
19 RP11-30F17 C 19p13.2~13.3(FHCRC)
chr19 6Mb AC016331.2 T99639 B87761.1 T7,
B87760.1 SP6
 
19 RP11-330I7 C 19p13.2~13.3(FHCRC)
chr19 6Mb AC025343.2      
19 RP11-565J3 R 19p13.3a(NCI)
chr19 5Mb AC021165.4   CL423256.1 T7  
19 CTD-2231E14 R 19p13.2(UCSF)
chr19 16Mb AC008894.9   AQ146440.1 T7,
AQ235672.1 SP6
 
19 RP11-1137G4 CR 19p13.2(FHCRC)
19p13.2d(NCI)
chr19 6Mb AC025278.5   AQ733707.1*u T7  
19 RP11-197O4 CR 19p13.2(FHCRC)
19p13.2a(NCI)
chr19 10Mb AC024182.2   CL423283.1 SP6,
CL423288.1 T7
 
19 RP11-19I2 C 19p13.2(FHCRC)
chr19 11Mb AC067963.3 AFMB055ZC9 B89545.1 SP6,
B81964.1 T7
 
19 RP11-151O22 C 19p13.1~13.2(FHCRC)
chr19 12Mb AC009038.5*u H65733 AQ378138.1 SP6,
AQ378140.1 T7
 
19 CTD-3252C9 R 19p13.12c(NCI)
chr19 13Mb AC020916.8      
19 RP11-737I1 R 19p13.12a(NCI)
chr19 15Mb AC068845.3      
19 RP11-413M18 R 19p13.11e(NCI)
chr19 16Mb AC021138.4   CL423226.1 SP6,
CL423232.1 T7
 
19 CTD-3149D2 R 19p13.11d(NCI)
chr19 17Mb AC008761.8   AQ805530.1*u SP6  
19 RP11-678G14 R 19p12b~12c(NCI)
chr19 21Mb AC123912.1      
19 RP11-157B13 R 19p12b(NCI)
chr19 22Mb AC020700.4,
AC073539.3
SHGC-34357*u AQ373544.1 T7,
AQ373542.1 SP6
 
19 CTB-28I9 R 19p12a(NCI)
chr19 23Mb AC011493.5      
19 RP11-17N20 R 19q12b(NCI)
chr19 35Mb AC011883.4   B82807.1 SP6,
B82808.1*u T7
 
19 RP11-14D17 R 19q12c(NCI)
chr19 36Mb AC011590.6   B82262.1 SP6,
B87955.1 T7
 
19 RP11-67A5 C 19q13.1~13.2(FHCRC)
chr19 44Mb AC018477.12 AA668301    
19 RP11-31D10 R 19q13.11b(NCI)
chr19 39Mb AC018791.3   AQ046108.1 ,
AQ081490.1
 
19 RP11-44B13 R 19q13.12b(NCI)
chr19 42Mb AC009194.9   AQ203056.1 ,
AQ203055.1
 
19 RP11-9B17 R 19q13.12c(NCI)
chr19 42Mb AC007676.19   B72491.1 T7,
B72490.1*u SP6
 
19 RP11-22H18 C 19q13.2(FHCRC)
chr19 49Mb AC021291.3   B86243.1 SP6,
B86244.1 T7
 
19 RP11-317E13 C 19q13.2(FHCRC)
chr19 47Mb AC068283.4      
19 RP11-568L16 C 19q13.2(FHCRC)
chr19 50Mb AC023329.2      
19 RP11-46C6 CR 19q13.2(FHCRC)
19q13.31a(NCI)
chr19 48Mb AC068785.12 AA425139 AQ199858.1 ,
CL423261.1 T7,
CL423257.1 SP6,
AQ199854.1
 
19 RP11-21J15 CR 19q13.2(FHCRC)
19q13.31b(NCI)
chr19 49Mb AC013814.3 AFM329WH1 B85964.1 SP6,
B85965.1 T7
 
19 RP11-2J15 C 19q13.2~13.3(FHCRC)
chr19 51Mb AC009858.2*u AFM284YG5, AFM284YG5*u B63642.1 T7,
B48575.1 T7,
B63641.1 SP6
 
19 RP11-687M15 C 19q13.2~13.3(FHCRC)
chr19 51Mb AC025983.3      
19 RP11-84C16 C 19q13.2~13.3(FHCRC)
chr19 49Mb AC021988.4 H24954    
19 RP11-17I20 C 19q13.3(FHCRC)
chr19 52Mb AC023094.2*d AFMA133ZH9 B82725.1*d SP6 multiple_placements_on_genome
19 RP11-17I20 C 19q13.3(FHCRC)
chr19 53Mb AC023094.2 AFMA133ZH9 B82725.1 SP6 multiple_placements_on_genome
19 RP11-3N16 C 19q13.3~13.4(FHCRC)
chr19 53Mb AC011212.3 AA291715 B63839.1 SP6,
B48878.1 T7
 
19 RP11-492P7 C 19q13.3~13.4(FHCRC)
chr19 51Mb AC027709.2      
19 RP11-50I11 CR 19q13.3~13.4(FHCRC)
19q13.33b(NCI)
chr19 54Mb AC068786.11 AA489700 AQ115178.1 ,
CL423293.1 T7,
CL423289.1 SP6,
AQ053110.1
 
19 RP11-510I16 C 19q13.3~13.4(FHCRC)
chr19 55Mb AC021154.5      
19 RP11-563O21 C 19q13.3~13.4(FHCRC)
chr19 54Mb AC021163.3      
19 RP11-43N16 R 19q13.32b(NCI)
chr19 52Mb AC073548.5,
AC087454.1
AFMA133ZH9    
19 RP11-158G19 C 19q13.4(FHCRC)
chr19 59Mb AC022318.5   AQ389886.1 T7,
AQ389885.1 SP6
 
19 RP11-61M18 C 19q13.4(FHCRC)
chr19 58Mb AC079751.1   AQ194314.1 ,
AQ194316.1
 
19 RP11-795B6 CR 19q13.4(FHCRC)
19q13.41a(NCI)
chr19 55Mb AC027602.4   AQ467977.1*u T7,
AQ492749.1*u SP6
 
19 RP11-44L20 R 19q13.41b(NCI)
chr19 58Mb AC015589.4   AQ203126.1 ,
AQ203125.1
 
19 RP11-45K21 R 19q13.42c~13.43b(NCI)
chr19 61Mb AC012107.2   AQ200180.1 ,
AQ200181.1
 
19 RP11-420P11 R 19q13.43b~13.43c(NCI)
chr19 63Mb AC009763.5   AQ550064.1 T7  
total46C:27 R:26 S:04646 461331 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.