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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
20 RP1-82O2 20pter(UChicago)
 chr20 0Mb   D20S1157    
20 CTA-394A2 R 20p13(CSMC)
 chr20 5Mb   AFMB352XD9    
20 CTB-19N15 R 20p13(CSMC)
 chr20 3Mb   D20S193    
20 CTB-41B20 R 20p13(CSMC)
 chr20 7Mb   AFMC017ZE1    
20 CTB-49H2 R 20p13(CSMC)
 chr20 1Mb   IB255    
20 CTB-50F4 R 20p13(CSMC)
 chr20 5Mb   AFMA130YA9    
20 RP11-107L14 C 20p13(FHCRC)
 chr20 2Mb   AFM333XE5 AQ316350.1 SP6,
AQ316353.1 T7		  
20 RP11-147L21 CR 20p13(FHCRC)
20p13f(NCI)
 chr20 0Mb AC040953.2 T98414, AFM077XD3, AFM077XD3*u CL423326.1 T7,
CL423321.1 SP6,
AQ373834.1*u SP6		  
20 RP11-153M12 C 20p13(FHCRC)
 chr20 0Mb   AFMA131WF1 AQ387838.1 T7,
AQ387835.1 SP6		  
20 RP11-24E15 C 20p13(FHCRC)
 chr20 0Mb   AFM077XD3, AFM077XD3*u B89327.1 SP6,
B86599.1 SP6		  
20 RP11-26F18 C 20p13(FHCRC)
 chr20 3Mb AC016217.2 AFM240ZF4, AFM240ZF4*u B86854.1 T7,
B86853.1 SP6		  
20 RP11-78P4 C 20p13(FHCRC)
 chr20 1Mb   AFM240WB8, AFM240WB8*u AQ281462.1 SP6  
20 RP11-235C20 CR 20p12.3c(NCI)
20p13(FHCRC)
 chr20 5Mb   AFMB352XD9 CL423224.1 T7,
CL423219.1 SP6		  
20 RP11-26H9 C 20p12.3~13(FHCRC)
 chr20 6Mb   AFMA196WF5 B84573.1 T7  
20 RP11-32O9 C 20p12.3~13(FHCRC)
 chr20 8Mb   AFM238ZC11, AFM238ZC11*u    
20 RP5-846P21 S 20p12.3~13(SC)
 chr20 44Mb   stSG25427    
20 RP11-149O7 C 20p12~13(FHCRC)
 chr20 5Mb   AFMB290WH5 AQ377577.1 T7,
AQ377575.1*u SP6		  
20 RP11-48M7 CR 20p12(FHCRC)
20p13a(NCI)
 chr20 3Mb   AFM234TF10 AQ198009.1 ,
CL423352.1 T7,
CL423351.1 SP6,
AQ198007.1 		 
20 RP11-40J24 C 20p12.3(FHCRC)
 chr20 10Mb   AFM288ZF5, AFM288ZF5*u    
20 RP11-9G21 C 20p12.3(FHCRC)
 chr20 6Mb   AFM317TE5, 30344*u    
20 RP11-24K4 CR 20p12.2b(NCI)
20p12.3(FHCRC)
 chr20 9Mb   AFMA086WE9 AQ014010.1 ,
B84457.1 SP6,
B88778.1 T7		  
20 CTB-49E19 R 20p12(CSMC)
 chr20 8Mb   AFMA218YB5    
20 RP1-42H13 S 20p12(SC)
 chr20 8Mb   stdJ859I17SP6    
20 RP11-103H2 C 20p12(FHCRC)
 chr20 9Mb   AFM234ZB12, AFM234ZB12*u AQ314678.1 SP6,
AQ314680.1 T7		  
20 RP11-11O15 C 20p12(FHCRC)
 chr20 15Mb   AFM291WE5 B73205.1 T7,
B73204.1 SP6		  
20 RP11-238I2 C 20p12(FHCRC)
 chr20 13Mb   AFM211YB8 AZ520880.1 T7  
20 RP11-287E11 C 20p12(FHCRC)
 chr20 11Mb   AFM120XC7, AFM120XC7*u    
20 RP11-57G7 C 20p12(FHCRC)
 chr20 30Mb   AFMA141XD9    
20 RP11-60N17 C 20p12(FHCRC)
 chr20 11Mb   AFM292XB5 AQ202451.1 ,
AQ202454.1 		 
20 RP11-90E23 CR 20p12(FHCRC)
20p12.2a(NCI)
 chr20 11Mb   AFM292XB5 AQ281557.1 SP6,
AQ281560.1 T7		  
20 RP11-91O7 C 20p12(FHCRC)
 chr20 10Mb   AFM292XB5, AFM291WE5*u AQ282510.1 SP6,
AQ282514.1 T7		  
20 RP5-968O21 S 20p11.22~12.3(SC)
 chr20 19Mb AL589784.1 stSG22092*d   multiple_placements_on_genome
20 RP5-968O21 S 20p11.22~12.3(SC)
 chr20 18Mb AL589784.1*d RH46181   multiple_placements_on_genome
20 RP11-110C10 C 20p11.2~12(FHCRC)
 chr20 18Mb AL389897.4 AFMA337ZH9 AQ323522.1 T7,
AQ350111.1 SP6		  
20 RP11-11M17 CR 20p11.2~12(FHCRC)
20p12.1a(NCI)
 chr20 17Mb AC013628.2 AFM242YF8, AFM242YF8*u B73188.1 SP6,
B73189.1 T7		  
20 RP11-134G22 C 20p11.2~12(FHCRC)
 chr20 15Mb   AFMC013XE5 AQ344412.1 SP6  
20 RP11-16N16 C 20p12.1(FHCRC)
 chr20 16Mb   AFM260XG5, AFM260XG5*u B85418.1 SP6,
B82562.1 T7		  
20 RP11-51O4 CR 20p12.1(FHCRC)
20p12.1b(NCI)
 chr20 15Mb   AFM044XB4, AFM291WE5, AFM044XB4*u, AFM044XB4*u CL423282.1 SP6,
AQ053674.1 ,
CL423286.1 T7,
AQ053676.1 		 
20 RP11-65G18 C 20p12.1(FHCRC)
 chr20 15Mb   AFMA224XF1 AQ200787.1  
20 CTB-13L16 R 20p11.2(CSMC)
 chr20 22Mb   D20S180    
20 CTB-66L15 R 20p11.2(CSMC)
 chr20 15Mb   AFM044XB4    
20 RP11-58B10 CR 20p11.2(FHCRC)
20p11.21b(NCI)
 chr20 24Mb   AFMA191XC1 AQ201224.1 ,
CL423349.1 T7,
CL423346.1 SP6,
AQ201222.1 		 
20 RP11-77C2 C 20p11.2(FHCRC)
 chr20 23Mb   AFM248XB9, AFM248XB9*u AQ286108.1*u T7  
20 RP5-887B18 S 20p11.21~11.23(SC)
       stSG25192*u    
20 RP1-149F7 S 20p11.1~11.23(SC)
 chr20 20Mb   stSG25591    
20 RP11-32N12 C 20p11.1~11.2(FHCRC)
 chr20 24Mb   AFMA210WH9 AQ045416.1  
20 RP11-470C13 R 20p11.23a~11.22b(NCI)
 chr20 20Mb AL161658.21 RH12147 AZ694839.1 T7,
CL423319.1 T7		  
20 RP11-7F10 C 20p11.22(FHCRC)
 chr20 21Mb   AFMB027ZB9 B72018.1 SP6,
B72019.1 T7		  
20 RP4-784C20 S 20p11.21~11.22(SC)
 chr20 22Mb   stSG25231    
20 CTB-66M12 R 20p11.1(CSMC)
 chr20 24Mb   AFMA191XC1    
20 CTD-2182L9 S 20q11.1~11.23(SC)
 chr20 34Mb AL390374.16 stbA2182L9A AQ023121.1 T7,
AQ024779.1 SP6		  
20 RP11-332A4 CS 20q11.1~11.23(SC)
20q11.2(FHCRC)
 chr20 35Mb AL391114.12 stSG29200*u    
20 RP11-469J7 S 20q11.1~11.23(SC)
 chr20 35Mb   stdJ621N11SP6    
20 CTB-49C20 R 20q11.2(CSMC)
 chr20 35Mb   AFMB291XD9    
20 CTB-50L18 R 20q11.2(CSMC)
 chr20 30Mb   AFMA339XF5, AFMB054ZH9, AFMB059WB1    
20 CTD-2018E1 C 20q11.2(FHCRC)
       Hs.2010*u    
20 RP11-134I8 C 20q11.2(FHCRC)
       AFMA339XF5*u, AFMB054ZH9*u AQ344420.1*u SP6,
AQ386884.1*u T7		  
20 RP11-160I20 C 20q11.2(FHCRC)
 chr20 32Mb   AFM123YF8, AFM123YF8*u AQ376160.1 T7  
20 RP11-318N1 RS 20q11.21~11.23(SC)
20q11.22a(NCI)
 chr20 32Mb   stdJ791H18T7 AQ536609.1 SP6,
AQ536610.1 T7		  
20 RP11-47O20 C 20q11.2(FHCRC)
 chr20 30Mb   AFMA141XD9, AFM262XF9 AQ199707.1  
20 RP1-149N17 S 20q11.2~12(SC)
 chr20 36Mb   D20S1055    
20 RP11-138A15 C 20q11.2~12(FHCRC)
 chr20 35Mb   AFMA163XH1 AQ382793.1 SP6  
20 RP11-71N16 C 20q11.2~12(FHCRC)
 chr20 37Mb   AFM224YC1 AQ266290.1 SP6  
20 RP5-870J12 S 20q11.2~12(SC)
 chr20 39Mb   stSG25449    
20 CTD-2202H1 S 20q11.22~12(SC)
 chr20 36Mb   stbA2202H1A AQ338610.1 SP6,
AQ032598.1 T7		  
20 RP5-1196A2 S 20q11.22~12(SC)
 chr20 36Mb   stSG25240    
20 CTB-7J17 R 20q12(CSMC)
 chr20 43Mb   D20S1069    
20 RP11-109C3 C 20q12(FHCRC)
 chr20 45Mb   AFM326XD5, AFM326XD5*u AQ320113.1 T7,
AQ353858.1*u SP6		  
20 RP11-111H12 C 20q12(FHCRC)
 chr20 39Mb   AFM051XF12, AFM051XF12*u AQ342025.1 T7,
AQ319794.1*u SP6		  
20 RP11-13F12 C 20q12(FHCRC)
 chr20 40Mb   AFMA285WF1 B76027.1 T7  
20 RP11-169A6 C 20q12(FHCRC)
 chr20 43Mb AC026018.1 AFM273YH9, T94961, AFM273YH9*u AQ422762.1 SP6  
20 RP11-17F3 CR 20q12(FHCRC)
20q12(NCI)
 chr20 40Mb   AFM163YH8, AFM163YH8*u B85443.1 T7,
AZ515860.1 SP6		  
20 RP11-29H19 C 20q12(FHCRC)
 chr20 42Mb   AFM189YA7 B87579.1 T7  
20 RP11-4A12 C 20q12(FHCRC)
 chr20 41Mb   AFMC013YH9 B48914.1 SP6  
20 RP11-69I10 C 20q12(FHCRC)
 chr20 41Mb   AFM029YC3, AFM029YC3*u, AFM029YC3*u AQ237359.1 T7,
AQ237356.1 SP6		  
20 RP11-9M24 CR 20q12(FHCRC)
20q12b(NCI)
 chr20 38Mb   AFM142XH4, AFM142XH4*u CL423320.1 SP6,
CL423325.1*u T7		  
20 RP11-30F23 CR 20q12(FHCRC)
20q13.12a(NCI)
 chr20 42Mb   AFMA060WG1 B87770.1 SP6,
B87771.1 T7		  
20 RP11-75C17 C 20q12~13.1(FHCRC)
 chr20 44Mb   AFMA132XE9 AQ266365.1 SP6,
AQ239123.1 T7		  
20 RP11-151A11 R 20q13.11a(NCI)
 chr20 41Mb AL359695.6 AFMC013YH9 AQ376230.1 SP6,
AQ376253.1 T7		  
20 CTB-16A12 R 20q13.1(CSMC)
 chr20 51Mb   MR12529    
20 CTB-56P7 R 20q13.1(CSMC)
 chr20 49Mb   D20S185    
20 RP1-149D20 S 20q13.1(SC)
 chr20 43Mb   stdJ925K22SP6    
20 RP1-46B15 S 20q13.1(SC)
 chr20 43Mb   GDB:196483    
20 RP11-124D1 C 20q13.1(FHCRC)
 chr20 46Mb   AFM238VH6, AFMB017XG5 AQ343418.1 SP6,
AQ343420.1 T7		  
20 RP11-51K19 C 20q13.1(FHCRC)
 chr20 46Mb   AFM238VH6, AFMB017XG5 AQ052656.1  
20 RP11-5P14 CR 20q13.1(FHCRC)
20q13.13d~13.13e(NCI)
 chr20 48Mb   AFM205TC9 B69678.1 T7,
B49327.1 T7,
AZ517073.1 SP6		  
20 CTB-66H24 R 20q13.1~13.2(CSMC)
 chr20 53Mb   AFMA225WE9    
20 RP11-10D18 CR 20q13.1~13.2(FHCRC)
20q13.2a(NCI)
 chr20 49Mb   AFMA192WB1 AZ520201.1 T7,
B72760.1 SP6		  
20 RP11-24K24 C 20q13.1~13.2(FHCRC)
 chr20 49Mb   AFMA244YE9 B86697.1 SP6  
20 RP11-72F10 C 20q13.1~13.2(FHCRC)
 chr20 48Mb   AFM165XH2, AFM165XH2*u AQ266384.1 SP6  
20 RP4-678D15 S 20q13.13~13.2(SC)
 chr20 51Mb BX276189.1 D20S1020    
20 RP5-853B7 S 20q13.13~13.31(SC)
 chr20 52Mb   stSG25250    
20 RP5-874N12 S 20q13.13~13.32(SC)
 chr20 51Mb   AFMA072ZB9    
20 CTA-390E3 R 20q13.2(CSMC)
       AFM211XG9*u, D20S883*u    
20 CTB-19M7 R 20q13.2(CSMC)
 chr20 50Mb   AFMA153YC9    
20 CTB-22N5 R 20q13.2(CSMC)
 chr20 50Mb   AFMA153YC9, AFMA122XC5    
20 CTB-44F2 R 20q13.2(CSMC)
 chr20 50Mb   AFMA153YC9    
20 RP11-15M15 C 20q13.2(FHCRC)
 chr20 51Mb AL391097.13 AFMC028ZC5 B83554.1 T7,
B76563.1 SP6		  
20 RP11-172C21 CR 20q13.2(FHCRC)
20q13.2d(NCI)
 chr20 53Mb   AFMA225WE9, AFMA114YA5 CL423191.1 T7,
CL423190.1 SP6		  
20 RP11-195N11 C 20q13.2(FHCRC)
 chr20 53Mb AL158015.9 AFMA225WE9 AQ412168.1 T7  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
20 RP11-212M6 C 20q13.2(FHCRC)
 chr20 52Mb   AFM276XH1, AFM276XH1*u    
20 RP11-55E1 C 20q13.2(FHCRC)
 chr20 51Mb   AFMA072ZB9 AQ081624.1 T7,
AQ081623.1 		 
20 RP4-683E12 S 20q13.2(SC)
 chr20 52Mb   D20S609    
20 RP11-157P1 C 20q13.2~13.3(FHCRC)
 chr20 60Mb AL354836.13 AA459519 AQ374247.1 SP6  
20 RP11-1E23 C 20q13.2~13.3(FHCRC)
 chr20 57Mb AC015739.2*u AFM046XF6 B49581.1 T7,
AQ312655.1 SP6		  
20 RP11-218N20 S 20q13.2~13.33(SC)
 chr20 59Mb   stbA381C11SP6    
20 RP11-344C10 RS 20q13.2~13.33(SC)
20q13.32a(NCI)
 chr20 56Mb   stdJ646G2SP6 AQ540379.1 SP6,
AQ540381.1 T7		  
20 RP4-646G2 S 20q13.2~13.33(SC)
 chr20 56Mb   WI-12997    
20 RP11-94A18 C 20q13.3(FHCRC)
 chr20 58Mb   AFM218XE7, AFM218XE7*u AQ314311.1 SP6,
AQ314314.1 T7		  
total108C:64 R:37 S:23108104 1510862 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.