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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 RP11-103L11 C 5p15.3(FHCRC)
 chr5 3Mb AC092319.2 D5S675, AFM336TC1*u AQ314012.1 T7,
AQ314009.1 SP6		  
5 RP11-13H10 C 5p15.3(FHCRC)
 chr5 4Mb AC011582.4   B76053.1 T7,
B76052.1 SP6		  
5 RP11-20B3 C 5p15.3(FHCRC)
 chr5 3Mb AC026263.1, AC013664.2*u AFM205WH8, AFM205WH8*u B88669.1 SP6,
B83785.1 T7		  
5 RP11-94J21 CR 5p15.3(FHCRC)
5p15.33d(NCI)
 chr5 1Mb AC009170.6 AFMB002XC1 AQ281737.1 SP6,
AQ315935.1 T7		  
5 CTB-28D11 R 5p15(UCSF)
 chr5 16Mb AC010607.8 D5S2114    
5 CTC-248O4 R 5p15(UCSF)
 chr5 5Mb AC063974.3 D5S464    
5 RP11-1C1 C 5p15.2(FHCRC)
 chr5 10Mb AC011135.3,
AC092336.2		 Z39541 AQ311597.1 SP6,
B48319.1 T7		  
5 RP11-215G15 C 5p15.2(FHCRC)
 chr5 10Mb AC023112.4,
AC106760.2		 AFM255XB9, AFM255XB9*u    
5 RP11-260E18 C 5p15.2(FHCRC)
 chr5 16Mb AC024588.4 D5S416, AFM205WH10*u AQ486951.1 T7,
AQ486949.1 SP6		  
5 RP11-81B23 C 5p14.3(FHCRC)
 chr5 18Mb AC114981.2   AZ521516.1 SP6,
AQ280997.1 SP6,
AZ521518.1 T7,
AQ281000.1 T7		  
5 RP11-91I13 5p14(FHCRC)
 chr5 88Mb AC122721.2   AQ281457.1 SP6,
AQ281461.1 T7		  
5 RP11-5N11 CR 5p13.3~14(FHCRC)
5p13.3d(NCI)
 chr5 31Mb AC022447.6 AFMA238ZA9 CG734283.1 SP6,
B49300.1 SP6,
CG734284.1 T7,
BZ749167.1 SP6		  
5 RP11-152K4 C 5p13~14(FHCRC)
 chr5 31Mb AC091898.2 AA421819    
5 RP11-422J14 C 5p13~14(FHCRC)
 chr5 32Mb AC022444.7 SGC34914 BH634728.1 SP6,
AQ547511.1 SP6,
AQ547512.1 T7,
BH634727.1 T7		  
5 RP11-61K20 R 5p14.3c(NCI)
 chr5 20Mb AC012095.14,
AC093303.2		   AQ194278.1 ,
AQ194276.1 		 
5 RP11-221D10 R 5p14.3a~14.3b(NCI)
 chr5 22Mb AC053491.7,
AC109455.2		      
5 RP11-116O11 R 5p14.2a(NCI)
 chr5 24Mb AC027469.2,
AC091885.2		   AQ348841.1 SP6,
AQ348842.1 T7		  
5 RP11-524C16 R 5p14.1e(NCI)
 chr5 26Mb AC093294.3      
5 RP11-46C20 R 5p14.1c(NCI)
 chr5 27Mb AC093533.2   AQ199902.1 ,
AQ199898.1 		 
5 RP11-138C1 C 5p13(FHCRC)
 chr5 39Mb AC025471.6 N64862 AQ382818.1 T7,
AQ382814.1 SP6		  
5 RP11-60A21 C 5p13(FHCRC)
 chr5 38Mb AC090076.1 N67017 AQ200892.1 ,
AQ200886.1 		 
5 RP11-85N3 CR 5p13(FHCRC)
5p13.2d(NCI)
 chr5 35Mb AC112486.2, AC068818.2*u AFM063YB6, AFM063YB6*u CG734285.1 SP6,
BZ749190.1 SP6,
CG734286.1 T7,
AQ282986.1 T7		  
5 RP11-19F12 CR 5p12~13(FHCRC)
5p13.1b(NCI)
 chr5 41Mb AC016271.2*u AFM276VB1, D5S420, AFM207YG5, AFM329YB9*u, AFM276VB1*u, AFM042XA11*u B92191.1 SP6,
B82983.1 T7		  
5 RP11-44D11 C 5p12~13(FHCRC)
 chr5 39Mb AC015575.5   AQ198821.1 ,
AQ198822.1 		 
5 RP11-79C6 C 5p13.2(FHCRC)
 chr5 35Mb AC112204.2   AQ282434.1 SP6,
AZ519145.1 SP6,
AQ581272.1 SP6,
AQ282436.1 T7,
AQ628788.1 T7		  
5 RP11-8C23 C 5p13.2(FHCRC)
 chr5 34Mb AC107616.3, AC011042.3*u AFM238WE11, AFM238WE11*u B72299.1 SP6,
B72300.1 T7		  
5 RP11-530D2 C 5p12(FHCRC)
 chr5 43Mb AC113413.1      
5 CTB-22L19 R 5q(CSMC)
 chr5 0Mb AC016572.6 WI-15997, AFMB005WF9, G50765*u   multiple_placements_on_genome
5 CTB-22L19 R 5q(CSMC)
 chr5 180Mb AC016572.6*d WI-15997, AFMB005WF9, G50765*u   multiple_placements_on_genome
5 RP11-160F8 CR 5q11.2(FHCRC)
5q11.2c(NCI)
 chr5 53Mb AC034246.4 AFM254WF1, AFM254WF1*u AZ516879.1 SP6,
AQ377832.1 T7		  
5 RP11-332C17 C 5q11.2(FHCRC)
 chr5 55Mb AC022265.3      
5 RP11-528L24 C 5q11.2(FHCRC)
 chr5 54Mb AC091977.3      
5 RP11-143O12 CR 5q11.2(FHCRC)
5q12.1a(NCI)
 chr5 55Mb AC021572.2 AFM274XA5, AFM274XA5*u AQ371733.1 T7,
AQ371730.1 SP6		  
5 RP11-15P2 CR 5q12(FHCRC)
5q12.3a(NCI)
 chr5 66Mb AC063978.3 D5S647, AFM292VE1*u B75410.1 T7,
B75409.1 SP6		  
5 RP11-195E2 C 5q12(FHCRC)
 chr5 70Mb AC044797.5   AQ416166.1 SP6  
5 RP11-232P16 C 5q12(FHCRC)
 chr5 66Mb AC044799.5   AQ485104.1 SP6  
5 RP11-480H11 C 5q12(FHCRC)
 chr5 65Mb AC016643.6   AQ635609.1 T7,
AQ635607.1 SP6		  
5 RP11-79C4 C 5q12(FHCRC)
 chr5 62Mb AC016646.6 D5S427, AFM238XA3*u AQ581270.1 SP6,
AZ519144.1 SP6,
AQ282430.1 SP6,
AQ581271.1 T7,
AQ282432.1 T7		  
5 RP11-206N2 C 5q12~13(FHCRC)
 chr5 76Mb AC068682.3,
AC114962.2		   AQ422147.1 SP6  
5 RP11-97L2 C 5q12~13(FHCRC)
 chr5 73Mb AC041042.4 H72122 AQ320791.1 T7,
AQ320790.1 SP6		  
5 RP11-456A17 C 5q13(FHCRC)
 chr5 78Mb AC069033.2   AQ582585.1*u T7  
5 RP11-951K18 C 5q13(FHCRC)
 chr5 68Mb AC145153.1*u   AQ724069.1 SP6,
AQ723991.1 T7		  
5 RP11-538B23 C 5q13~14(FHCRC)
 chr5 79Mb AC022223.18      
5 CTD-2014G23 R 5q13.2(UCSF)
 chr5 68Mb AC109996.3 UTR-04815 AQ304906.1*u SP6  
5 RP11-467A2 C 5q13.2(FHCRC)
 chr5 72Mb AC019104.3      
5 RP11-1H14 CR 5q13.2(FHCRC)
5q14.1a~14.1c(NCI)
 chr5 77Mb AC015454.3 AFM290VF5*u B63223.1 T7,
B48373.1 SP6		  
5 RP11-81H9 C 5q14.1(FHCRC)
 chr5 81Mb AC106824.2 D5S2029 AZ521594.1 SP6,
AQ281608.1 SP6,
AZ521596.1 T7,
AQ281612.1 T7		  
5 RP11-45O11 CR 5q14~15(FHCRC)
 chr2 160Mb AC016264.3*u AFM198WG9*d, AFM198WG9*u AQ200228.1 ,
AQ200227.1 ,
CL423179.1*d SP6,
CL423185.1*d T7		 multiple_placements_on_genome
5 RP11-45O11 CR 5q14~15(FHCRC)
 chr5 89Mb AC016264.3*u AFM198WG9, AFM198WG9*u CL423179.1 SP6,
CL423185.1 T7,
AQ200227.1*d ,
AQ200228.1*d 		multiple_placements_on_genome
5 RP11-114K6 C 5q15(FHCRC)
 chr5 94Mb AC011205.3   AQ346478.1 SP6,
AQ346480.1 T7		  
5 RP11-526D16 C 5q15~21(FHCRC)
 chr5 95Mb AC021432.3      
5 RP11-58M12 C 5q15~21(FHCRC)
 chr5 98Mb AC021449.3,
AC092372.3		 WI-13675 AQ199227.1 ,
AQ199226.1 		 
5 RP11-115L24 CR 5q21(FHCRC)
5q21.2b(NCI)
 chr5 103Mb AC009815.2 D5S505, AFM268VB1*u AQ348042.1 T7,
AQ348041.1 SP6		  
5 RP11-18K11 C 5q21(FHCRC)
 chr9 34Mb AC013784.2*u SHGC-37670 B88116.1 SP6,
B88117.1 T7		  
5 RP11-252I13 CR 5q21(FHCRC)
5q21.3d(NCI)
 chr5 106Mb AC024587.5 D5S475 AQ481343.1 T7,
AQ481330.1 SP6		  
5 RP11-120B7 R 5q21.3e(NCI)
 chr5 107Mb AC133134.2   AQ350988.1 T7,
AQ350986.1*u SP6		  
5 RP11-231G15 R 5q21.3e~22.1a(NCI)
 chr5 108Mb AC091917.3      
5 RP11-13F18 C 5q22(FHCRC)
 chr6 1Mb AC011579.5 AFM092XB7 B76036.1 T7,
B76035.1 SP6		  
5 RP11-164A4 C 5q22~23(FHCRC)
 chr5 112Mb AC106750.3   AQ378314.1 SP6,
AQ378316.1 T7		  
5 RP11-551B22 C 5q23.1(FHCRC)
 chr5 70Mb AC012369.3,
AC109487.3		      
5 CTD-2025J21 R 5q23(UCSF)
 chr5 132Mb AC074127.2 WI-14977 AQ892483.1*u SP6  
5 CTD-2004C12 C 5q23~31(FHCRC)
 chr5 131Mb AC034216.5      
5 RP11-729C24 C 5q23~31(FHCRC)
 chr5 131Mb AC079320.9   AQ616675.1 SP6,
AQ616593.1 T7		  
5 RP11-114H7 R 5q23.3c~23.3d(NCI)
 chr5 130Mb AC113367.2   AQ383557.1 T7,
AQ347386.1 SP6		  
5 RP11-772D18 R 5q23.3d~31.1a(NCI)
 chr5 131Mb AC023861.3,
AC118464.2		   AQ597086.1 SP6,
AQ497351.1*u T7		  
5 RP11-89G4 C 5q31.1(FHCRC)
 chr5 131Mb AC116366.2   AQ282796.1 T7,
AQ282793.1 SP6		  
5 RP11-21C10 C 5q31.1~31.2(FHCRC)
 chr5 133Mb AC106763.2 AFM042XF8 B83103.1 SP6,
B85803.1 T7,
AQ008903.1 T7		  
5 CTB-1I21 R 5q31(CSMC)
 chr5 136Mb AC109439.3 bac5129T    
5 CTB-53D8 R 5q31(CSMC)
 chr5 128Mb AC008679.5 AFMA103ZA9, G38641    
5 CTB-60P23 R 5q31(CSMC)
 chr5 140Mb AC008688.7 G61762, AFM308ZA9, G56273, G08489, G61710    
5 RP11-215P8 C 5q31(FHCRC)
 chr5 133Mb AC109454.3      
5 RP11-461O14 C 5q31(FHCRC)
 chr5 137Mb AC113403.4   AZ521271.1 SP6,
AQ634167.1 T7		  
5 RP11-48L3 C 5q31~32(FHCRC)
 chr5 141Mb AC094107.3   AQ200299.1  
5 RP11-515C16 C 5q31~32(FHCRC)
 chr5 139Mb AC010687.6,
AC116353.2		      
5 RP11-678N8 C 5q31.2(FHCRC)
 chr5 138Mb AC026291.2   AQ518382.1 SP6  
5 RP11-124B12 C 5q32(FHCRC)
 chr5 146Mb AC021201.3   AQ344288.1 SP6,
AQ344292.1 T7		  
5 RP11-44B19 C 5q32(FHCRC)
 chr5 148Mb AC116312.2 AFM198ZH6 AQ203068.1 ,
AQ203066.1 		 
5 RP11-507E2 C 5q32~33(FHCRC)
 chr5 150Mb AC106805.1      
5 RP11-54C4 C 5q32~33(FHCRC)
 chr5 151Mb AC091982.3 AA449834 AQ082723.1 ,
AQ082725.1 T7		  
5 CTB-3B12 R 5q33(CSMC)
 chr5 153Mb AC008672.5 G38426, AFMA071ZF9, G32468, G33236    
5 CTB-3C20 R 5q33(CSMC)
 chr5 155Mb AC010304.8 AFM210VG3, G61982, AFM210VG3*u, D5S487*u    
5 CTB-4E7 R 5q33(CSMC)
 chr5 156Mb AC010609.7 AFMA083XB9    
5 RP11-170L13 CR 5q33(FHCRC)
5q33.2c(NCI)
 chr5 155Mb AC114959.2 AFM311VF9 AQ412570.1 SP6,
AQ412573.1 T7		  
5 RP11-86C20 CR 5q33(FHCRC)
5q33.2b(NCI)
 chr5 152Mb AC091991.2 AFM191XD8, AFM191XD8*u BZ749192.1 T7,
BZ749191.1 SP6		  
5 CTB-37A13 R 5q34(CSMC)
 chr5 169Mb AC010303.7 MR4102    
5 RP11-290G6 C 5q34(FHCRC)
 chr5 161Mb AC091926.4      
5 RP11-252I14 CR 5q34~35(FHCRC)
5q35.3g(NCI)
 chr5 179Mb AC104115.3   AZ517447.1 SP6,
AQ491787.1 T7		  
5 RP11-117L6 C 5q35(FHCRC)
 chr5 170Mb AC093246.3   AQ350516.1 T7,
AQ350512.1 SP6		  
5 RP11-281O15 C 5q35(FHCRC)
 chr5 178Mb AC025845.2,
AC104117.2		   AQ506000.1 SP6  
5 RP11-305G6 C 5q35(FHCRC)
 chr5 178Mb AC079983.3,
AC112189.1		      
5 RP11-354C13 C 5q35(FHCRC)
 chr5 177Mb AC113388.2   AZ517807.1 T7,
AQ530696.1 SP6		  
5 RP11-564G9 C 5q35(FHCRC)
 chr5 176Mb AC023788.4      
5 RP11-627M5 C 5q35(FHCRC)
 chr5 176Mb AC026513.2   AQ439183.1 T7,
AQ493575.1 SP6		  
5 RP11-754A4 C 5q35(FHCRC)
 chr5 180Mb AC023255.3,
AC113427.2		      
5 RP11-779O18 C 5q35(FHCRC)
 chr5 172Mb AC022217.5   AQ463543.1*u T7  
total93C:71 R:35 S:09393 934463 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.