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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
7 RP1-164D18 7pter(UChicago)
 chr7 0Mb AC093614.4      
7 RP11-191P7 C 7p22(FHCRC)
 chr7 3Mb AC073316.6   AQ413267.1 SP6  
7 RP11-713A20 C 7p22(FHCRC)
 chr7 0Mb AC093686.6   AQ437614.1 SP6  
7 RP11-754B14 C 7p22(FHCRC)
 chr7 5Mb AC073481.5   AQ619586.1 SP6,
AQ619421.1 T7		  
7 RP11-90P13 C 7p22(FHCRC)
 chr7 0Mb AC093627.4 AFMB035XB9 AQ285244.1 SP6,
AQ285247.1*u T7		  
7 RP11-71F18 C 7p21(FHCRC)
 chr7 19Mb AC007091.3 AFM199XC3, AFM199XC3*u AQ268694.1 T7,
AQ268693.1 SP6		  
7 CTB-23M10 R 7p15~21(UCSF)
 chr7 21Mb AC004595.1      
7 CTB-95A14 R 7p15~21(UCSF)
 chr7 19Mb AC005062.1 D7S654, D7S654*u    
7 RP11-240H8 C 7p15~21(FHCRC)
 chr7 22Mb AC073072.11   CC737075.1 SP6  
7 CTB-119H12 R 7p15(UCSF)
 chr7 23Mb AC003087.2 D7S673, D7S673*u    
7 RP11-121A8 C 7p14~15(FHCRC)
 chr7 38Mb AC006033.2 N50880 AQ343521.1 T7,
CC737331.1 T7,
AQ343517.1 SP6		  
7 RP11-600K23 C 7p14~15(FHCRC)
 chr7 30Mb AC092789.1 AA699441 AQ339332.1 SP6,
AQ339262.1*u T7		  
7 RP11-627P22 C 7p15.2(FHCRC)
 chr7 26Mb AC073472.6   CG385908.1 T7,
AQ436657.1*u T7,
AQ463788.1*u SP6		  
7 RP11-16G1 C 7p14(FHCRC)
 chr7 32Mb AC012240.4,
AC018633.2		   B75460.1 T7,
B75459.1 SP6		  
7 RP11-178P2 C 7p14(FHCRC)
 chr7 35Mb AC009531.11   CC737105.1 T7,
AQ414449.1*u T7		  
7 RP11-85E16 C 7p14(FHCRC)
 chr7 36Mb AC007349.1   CC737107.1 T7  
7 RP11-89N17 C 7p14(FHCRC)
 chr7 33Mb AC008080.1   AQ284915.1 SP6,
CC875195.1 T7,
AQ284918.1 T7,
AZ517825.1 T7		  
7 RP11-100C21 C 7p13~14(FHCRC)
 chr7 42Mb AC027269.5 SHGC-6356 AQ320307.1 T7,
AQ320304.1 SP6		  
7 RP11-112B7 C 7p13~14(FHCRC)
 chr7 44Mb AC093630.1 AFM329TG9 CG385888.1 T7,
AQ312443.1*u SP6,
AQ343185.1*u T7		  
7 RP11-105B9 C 7p13(FHCRC)
 chr7 44Mb AC013436.5   AQ318212.1 T7,
CG385890.1 T7,
AQ318208.1 SP6,
CG385901.1*u T7		  
7 RP11-109N2 C 7p13(FHCRC)
 chr7 46Mb AC079757.8 SHGC-391 AQ350749.1 SP6,
AQ323289.1 T7		  
7 RP11-52M17 C 7p13(FHCRC)
 chr7 44Mb AC011894.3 AFMB295YG1, AFMB295YG1*u AQ052565.1 ,
AQ052566.1 		 
7 RP11-111K18 C 7p12~13(FHCRC)
 chr7 42Mb AC010132.5   AQ351436.1 T7,
AQ322901.1 SP6		  
7 RP11-64I2 C 7p12(FHCRC)
 chr7 39Mb AC011290.3 SHGC-33366 AQ236921.1 SP6,
AQ236922.1 T7		  
7 RP11-832D10 C 7p12(FHCRC)
 chr7 50Mb AC080092.9   AQ816453.1 SP6,
CC799261.1 T7,
AQ827108.1 T7		  
7 RP11-339F13 C 7p11.2~12(FHCRC)
 chr7 55Mb AC073324.6   CG385928.1 T7  
7 RP11-745J15 C 7p11.2(FHCRC)
 chr7 55Mb AC092101.5   CG784140.1 SP6  
7 RP11-324F21 C 7q11.1~11.21(FHCRC)
 chr7 66Mb AC073089.5   CG917911.1 T7,
AQ539141.1 T7,
CG917912.1 SP6		  
7 CTB-23I15 R 7q11(UCSF)
 chr7 72Mb AC005049.2      
7 RP11-460N20 C 7q11.21(FHCRC)
 chr7 64Mb AC073210.8   CG846661.1 T7,
CG846662.1 SP6		  
7 RP11-396K3 C 7q11.2(FHCRC)
 chr7 72Mb AC006995.5   CC060635.1 T7,
CG876948.1 SP6		  
7 RP11-483G21 C 7q11.2(FHCRC)
 chr7 72Mb AC073841.9   CC060638.1 SP6,
AQ637133.1 SP6		  
7 RP11-622P13 C 7q11.2(FHCRC)
 chr7 72Mb AC073846.6   AQ370880.1 SP6,
BZ724412.1 SP6,
CL246291.1 T7		  
7 RP11-813J7 C 7q11.2(FHCRC)
 chr7 73Mb AC083884.6   CG917920.1 SP6,
CG917919.1 T7,
AQ568330.1*u T7		  
7 RP11-229D13 C 7q11.2~21(FHCRC)
 chr7 75Mb AC006330.5   BZ724406.1 T7,
CL440283.1 SP6		  
7 RP11-89D15 C 7q11.22(FHCRC)
 chr7 67Mb AC084438.5 SHGC-3906 AQ283793.1 SP6,
CG876897.1 SP6,
CG876896.1 T7,
AQ283794.1 T7		  
7 CTB-51J22 R 7q11.23c(NCI)
 chr7 73Mb AC005056.2 sWSS1629 CG734352.1 SP6,
BZ748996.1 SP6,
CG734351.1 T7		  
7 RP11-697H17 C 7q21.1(FHCRC)
 chr7 80Mb AC073850.4   AQ613954.1*u T7  
7 RP11-89L18 C 7q21.1(FHCRC)
 chr7 78Mb AC138180.1   AQ286610.1 T7,
AQ286609.1*u SP6		  
7 RP11-134N3 C 7q21(FHCRC)
 chr7 89Mb AC084396.3   AQ388351.1 T7,
AQ388350.1 SP6		  
7 RP11-533L22 C 7q21(FHCRC)
 chr7 84Mb AC073958.4   CL246301.1 T7,
CL250821.1 SP6		  
7 RP11-638A9 C 7q21(FHCRC)
 chr7 86Mb AC073423.6   AQ402708.1 T7  
7 CTB-22J17 R 7q21.2~21.3(CSMC)
 chr7 88Mb AC002382.1 AFM304TF5, AFM304TF5*u    
7 CTB-104I4 R 7q21.2b(NCI)
 chr7 92Mb AC000119.1      
7 RP11-126L15 C 7q22(FHCRC)
 chr7 100Mb AC011895.4 AI261660 AQ348877.1 SP6,
AQ348878.1*u T7		  
7 RP11-22N19 C 7q22(FHCRC)
 chr7 105Mb AC007032.2   AQ009346.1 T7,
B86357.1 T7		  
7 RP11-336D7 C 7q22(FHCRC)
 chr7 100Mb AC009488.5      
7 RP11-757A13 C 7q22(FHCRC)
 chr7 99Mb AC069294.5      
7 CTB-152G17 R 7q22~31(UCSF)
 chr7 104Mb AC005070.1      
7 RP11-523G16 C 7q22~31(FHCRC)
 chr7 106Mb AC073420.6      
7 RP11-645N11 C 7q22~31(FHCRC)
 chr7 102Mb AC073127.11   AQ407785.1*u T7  
7 CTB-66D11 R 7q22.3a(NCI)
 chr7 104Mb AC002430.1 sWSS3516 BZ748997.1*u SP6,
BZ748998.1*u T7		  
7 CTB-20D2 R 7q22.3c(NCI)
 chr7 106Mb AC002381.1 sWSS1826 BZ748991.1 T7,
CG734359.1 SP6,
BZ748990.1 SP6		  
7 RP11-78C11 C 7q31.1(FHCRC)
 chr7 114Mb AC017003.4 SHGC-1917 AQ283860.1 SP6,
AQ283862.1*u T7		  
7 CTB-133K23 R 7q31(UCSF)
 chr7 117Mb AC000061.1      
7 RP11-191A7 C 7q31(FHCRC)
 chr7 111Mb AL645742.3      
7 RP11-155G14 C 7q31~32(FHCRC)
 chr7 127Mb AC010655.7 R52542 AQ388742.1 T7,
AQ388740.1 SP6		  
7 RP11-309L24 C 7q31~32(FHCRC)
 chr7 128Mb AC025594.5      
7 CTB-22K14 R 7q31.1b(NCI)
 chr7 108Mb AC004014.2 sWSS553*u CG734360.1 SP6,
BZ748993.1 T7,
BZ748992.1 SP6		  
7 RP11-593H15 C 7q31.3(FHCRC)
 chr7 121Mb AC073471.4      
7 RP11-66F23 C 7q31.3~32(FHCRC)
 chr7 128Mb AC024952.4 SHGC-35138 AQ236633.1 SP6  
7 RP11-3L10 C 7q31.33~32.1(FHCRC)
 chr7 120Mb AC074085.7 SHGC-1892*u, SHGC-13594*u B63815.1 T7,
B48836.1 T7,
AQ316869.1 SP6		  
7 RP11-2E11 C 7q32~33(FHCRC)
 chr7 129Mb AC007938.1 AA845178 B48495.1 SP6,
B48496.1 T7		  
7 RP11-738B7 C 7q32~33(FHCRC)
 chr7 129Mb AC084864.4      
7 RP11-88K4 C 7q32~33(FHCRC)
 chr7 136Mb AC020581.10 SHGC-35608 AQ285884.1 SP6  
7 RP11-140I14 C 7q33(FHCRC)
 chr7 134Mb AC083871.2 AFM198ZH8, AFM198ZH8*u, AFM198ZH8*u AQ386631.1 T7,
AQ386628.1 SP6		  
7 RP11-206N24 C 7q33(FHCRC)
 chr7 136Mb AC018728.6   AQ422168.1 SP6,
AQ422179.1 T7		  
7 RP11-269N18 C 7q33(FHCRC)
 chr7 137Mb AC020983.8 SHGC-20457 AQ481000.1 SP6,
AZ081608.1*u SP6		  
7 RP11-29B3 C 7q33(FHCRC)
 chr7 137Mb AC022173.7 SHGC-15139    
7 RP11-372E15 C 7q33(FHCRC)
 chr7 132Mb AC083873.3   AQ550128.1 SP6,
AQ528051.1 T7		  
7 RP11-114L10 C 7q34~35(FHCRC)
 chr7 142Mb AC104597.3   AQ343103.1 T7,
AQ343100.1 SP6		  
7 RP11-811J9 C 7q35(FHCRC)
 chr7 142Mb AC092214.3      
7 RP11-148K1 C 7q35~36(FHCRC)
 chr7 150Mb AC010973.6 AA401479    
7 RP11-331D5 C 7q36(FHCRC)
 chr7 156Mb AC006372.2      
total74C:61 R:12 S:07474 742854 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.