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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
NA CTA-246H3 S 11q13.1-11q13.5,22q11.21-22q12.2(SC)
chr22 24Mb AL022324.1      
NA CTC-216H12 S Xp22,22q12(SC)
chr22 32Mb AL008715.1      
NA CTC-800G3 C 16q24,19p13.3,15q26,1p36,1q44,7p22,Yq11.2,6p25,5q35,3q29,6q27,7q36,9q34,20p13,12p13,11p15(FHCRC)
chr1 0Mb AC127532.15   B73343.1 SP6,
B73344.1 T7
 
NA RP1-101A2 S 20q12-20q13.13,6q22(SC)
chr20 44Mb AL133520.5      
NA RP1-110C15 S 2p11.1-2p11.2,Xq27.1-Xq27.3(SC)
chrX 143Mb AL138969.16      
NA RP1-133P16 S 7q21.3-7q22.1,6q26-6q27(SC)
chr7 94Mb AL157375.6      
NA RP1-149A16 S 22q13-22q13.2,22q12(SC)
chr22 31Mb AL021937.1      
NA RP1-170A21 S 22q12.3,22q13.3(SC)
chr22 48Mb Z82189.1      
NA RP1-191N21 S Yq11.2,8p23,6p25,4q26,5q35,19p13.3,15q26,3q29,6q27,20p13,1q41,11p15,20q13.3,1q43,1p36(FHCRC)
chr6 170Mb AL031259.1      
NA RP1-196P3 S 20p13,6q16.3-6q21(SC)
chr6 102Mb AL133403.10      
NA RP1-210G8 S 6q11.2-6q12,6q25.2-6q26(SC)
chr6 62Mb AL161440.9      
NA RP1-34P24 S 22q13.1,22q13.3,22q13.2-22q13.33(SC)
chr22 47Mb Z82202.1      
NA RP1-57A13 S Xq24,2q33(SC)
chrX 122Mb Z83848.1      
NA RP11-102O5 C Yq11.2,2q37,16q24,5q35,15q25,19p13.3,6q27,1q41,4q11,1q43,1p36(FHCRC)
chrY 25Mb AC006328.5      
NA RP11-104F9 C 2p11.1-2q11.1,20p11.1-20p11.2,3p11,2q12,22q11.2,7p11.1-7p11.2(FHCRC)
chr22 15Mb AC141588.1   AQ313339.1 SP6,
AQ313342.1 T7
 
NA RP11-105L10 C Yq11.23,Yp11.2(FHCRC)
chrY 7Mb AC007274.3   AQ319747.1 SP6,
AQ319752.1 T7
 
NA RP11-111A8 C 17p11.2,13q33(FHCRC)
chr13 104Mb AC027145.1*u SHGC-20838 AQ350825.1 T7,
AQ322117.1 SP6
 
NA RP11-114G11 C 7p11.1-7p11.2,7q11.1-7q11.2(FHCRC)
chr7 57Mb AC073057.6 AFM165ZF4 AQ344795.1 T7,
CG784124.1 T7,
CG784125.1 SP6,
AQ344793.1 SP6
 
NA RP11-115E20 C Yp11.3,Xq21(FHCRC)
chrY 2Mb AC006032.2   AQ344860.1 T7,
AQ344859.1 SP6
 
NA RP11-115M14 S 1q24.1-1q25.2,1p31.2-1p32.1(SC)
chr1 71Mb AL358453.8   AQ345686.1 SP6,
AQ345688.1 T7
 
NA RP11-115N23 S 5q11.1-5q11.2,1p11.1-1p13.2(SC)
chr1 120Mb AC069001.2, AL359981.10*u   AQ347103.1 T7,
AQ347100.1 SP6
 
NA RP11-115O15 S 9p12-9p21.1,9q13,9q22.2-9q31.1(SC)
chr9 33Mb AL353675.12   AQ344591.1 T7,
AQ344588.1 SP6
 
NA RP11-118J22 S 10q21.1,2q13(SC)
chr10 57Mb AC010996.9   AQ349486.1 T7,
AQ349483.1 SP6
 
NA RP11-119M6 C 4q35,21q11.2,13p11.1-13p11.2,14p11.1-14q11.1(FHCRC)
chr4 190Mb AC146634.1*d   AQ350583.1 T7,
AQ350581.1*d SP6
multiple_placements_on_genome
NA RP11-119M6 C 4q35,21q11.2,13p11.1-13p11.2,14p11.1-14q11.1(FHCRC)
chr4 0Mb AC146634.1   AQ350581.1 SP6,
AQ350583.1*d T7
multiple_placements_on_genome
NA RP11-11H9 C 2q21,21q11.2,12q11,14q11.2,15q11.2(FHCRC)
chr15 19Mb AC020679.7*d   B74884.1 SP6,
B74885.1*d T7
multiple_placements_on_genome
NA RP11-11H9 C 2q21,21q11.2,12q11,14q11.2,15q11.2(FHCRC)
chr15 19Mb AC020679.7   B74885.1 T7,
B74884.1*d SP6
multiple_placements_on_genome
NA RP11-125L9 C 21p13,22p13,13p13,14p13,15p13(FHCRC)
chr5 160Mb AC024410.2   AQ349003.1 T7  
NA RP11-12D5 C 6p24,Xp21(FHCRC)
chrX 27Mb AC021710.4,
AC112492.3
SHGC-21210 B74960.1 SP6  
NA RP11-12E10 C 4q27,14q11.2,15q11.2,11p15.5(FHCRC)
chr4 124Mb AC011571.3*u   B75749.1 SP6,
B75750.1 T7
 
NA RP11-12P21 C 9p12-9p13,9q12-9q21,21p11.1-21p11.2,15p11.1-15p11.2,13p11.1-13q11,14p11.1-14q11.1,22p11.1-22p11.2(FHCRC)
chr9 67Mb AL592220.6   B75979.1 SP6,
B75980.1 T7
 
NA RP11-139L10 C 6p11.1-6q11.1,11p15(FHCRC)
chr8 0Mb AC008165.3, AC136775.1*u,
AC138072.1*u
  AQ384402.1 SP6,
AQ384404.1 T7
 
NA RP11-139O21 C 15p11.1-15p11.2,2p11.1-2p11.2,1q12,21p11.1-21p11.2,13p11.1-13p11.2,7q36,14p11.1-14p11.2,22p11.1-22p11.2(FHCRC)
chr21 10Mb AL158811.12   AQ382337.1 SP6,
AQ382339.1 T7
 
NA RP11-13G8 C 10q21.1,13q14.1(FHCRC)
chr10 55Mb AC016817.6 SHGC-36014 B82214.1 T7  
NA RP11-144L1 S 1q22,1q21.3(FHCRC)
chr1 156Mb AL365440.13      
NA RP11-145J12 C Xq21,Yp11.3(FHCRC)
chrY 4Mb AC010084.3   AQ375325.1 SP6,
AQ375326.1 T7
 
NA RP11-149I22 C 15p11.1-15p11.2,21p11.1-21p11.2,13p11.1-13p11.2,14p11.1-14p11.2,22p11.1-22p11.2(FHCRC)
chr21 10Mb AL161418.8      
NA RP11-150N22 C 18p11.3,15p11.1-15p11.2,4q35,3q13.3-3q21,16p11.1-16p11.2,Yp11.1-Yp11.2,9p12-9p13,21p11.1-21p11.2,20q11.1-20q11.2,13p11.1-13p11.2,22p11.1-22p11.2,14p11.1-14p11.2,3p12-3p13(FHCRC)
chr17 42Mb AC104301.2   AQ376133.1*u SP6  
NA RP11-155J2 C 2p22,10q22,3p14,2q24(FHCRC)
chr2 154Mb AC008166.2   AQ373019.1 SP6,
AQ373021.1 T7
 
NA RP11-158H20 S 10p11.23,1p21.3-1p22.3(SC)
chr1 95Mb AL157708.4   AQ374145.1 T7  
NA RP11-15D18 C 11q22.1,11p15.5(FHCRC)
chr11 5Mb AC011647.9 SHGC-10494 B76389.1 T7,
B76388.1 SP6
 
NA RP11-15E1 S 9q12-9q21.11,14q12,2cen-2q11.2,9p11.1-9p12(SC)
chr9 42Mb AL136317.5*d   B75305.1 T7,
B82392.1 T7
multiple_placements_on_genome
NA RP11-15E1 S 9q12-9q21.11,14q12,2cen-2q11.2,9p11.1-9p12(SC)
chr9 42Mb AL136317.5   B82392.1 T7,
B75305.1 T7
multiple_placements_on_genome
NA RP11-15K19 C 7q11.22,7p11.2(FHCRC)
chr7 55Mb AC092579.3 SHGC-17265 B83542.1 T7,
CG784134.1 T7,
CG784135.1 SP6,
B76521.1 SP6
 
NA RP11-164D11 C 2p11.1-2p11.2,21q11.1,22q11.1,14q11.1,13q11,15q11.1,16p11.2(FHCRC)
chr22 15Mb AC141274.1   AQ379446.1 SP6,
AQ379450.1 T7
 
NA RP11-167C5 S 20p12-20p12.3,20cen,9p23-9p24(SC)
chr6 11Mb AL137069.15*d   AQ381450.1 SP6,
AQ381451.1*d T7
multiple_placements_on_genome
NA RP11-167C5 S 20p12-20p12.3,20cen,9p23-9p24(SC)
chr9 10Mb AL137069.15   AQ381451.1 T7,
AQ381450.1*d SP6
multiple_placements_on_genome
NA RP11-171B15 S 1p31.1-1p31.3,1q44(SC)
chr1 79Mb AC093430.3   AQ414733.1 SP6  
NA RP11-179C7 C 9p11.1-9q12,2q21,21p11.1-21p11.2,22p11.1-22q11.1,15p11.1-15p11.2,14p11.1-14q11.1(FHCRC)
chr14 18Mb AL139799.3   AQ415179.1 SP6,
AQ415181.1 T7
 
NA RP11-17L12 C 9q12,1q12,21p11.2,13p11.2,3q11.2,3p12,22p11.2,21p13,14p11.2,13p13,22p13,15p11.2,14p13,4p11-4p12,15p13(FHCRC)
chr21 0Mb AC011881.5*d   B82768.1 SP6,
B82769.1*u T7
multiple_placements_on_genome
NA RP11-17L12 C 9q12,1q12,21p11.2,13p11.2,3q11.2,3p12,22p11.2,21p13,14p11.2,13p13,22p13,15p11.2,14p13,4p11-4p12,15p13(FHCRC)
chr2 53Mb AC011881.5   B82768.1*d SP6,
B82769.1*u T7
multiple_placements_on_genome
NA RP11-18D5 C 17q21,6p25,2q37,8p23,22q11.2,1q41,1p36(FHCRC)
chr8 0Mb AC016992.5,
AC090135.13
     
NA RP11-19M12 C 9p12,9q22.2,9q11-9q12(FHCRC)
chr18 14Mb AC025953.2,
AP005058.2
  B83014.1 SP6,
B83015.1 T7
 
NA RP11-203D17 S 13q12.2-13q13.1,9p23(SC)
chr13 28Mb AL135900.17   AQ419223.1 T7,
AQ419221.1 SP6
 
NA RP11-216C10 S 7p13-7p14.3,20p11.23(SC)
chr20 22Mb AL356742.12      
NA RP11-217P16 C 2p11.2,2q13(FHCRC)
chr2 112Mb AC104651.2 SHGC-37233*u    
NA RP11-226I21 C 16q24,19p13.3,15q26,1q41,7p11.2,1q43,1p36,Yq11.2,2q37,4q26,6p25,8p23,5q35,3q29,6q27,9q34,10p11.1-10q11.1,20p13,22p11.1-22q11.1,20q13.3,11p15(FHCRC)
chr6 170Mb AL672310.3      
NA RP11-226O1 C 7q22,7p14,9q12,12q14(FHCRC)
chr7 29Mb AC007276.3   CC875176.1 T7  
NA RP11-228M15 C 15q11.2,15q12(FHCRC)
chr15 20Mb AC024930.4,
AC091565.10
     
NA RP11-23B24 C 9p12,Yq11.21,9q12,21p11.2,13p11.2,22p11.2,3q11.2,3p12,14p11.2,21p13,13p13,15p11.2,22p13,14p13,4p11-4p12,15p13(FHCRC)
    AC022192.3*u   AQ013281.1*u ,
AQ013294.1*u
 
NA RP11-251O17 S 9p11.2-9p13.1,9q21.11(SC)
9p12,2q11.2,9q12-9q13(FHCRC)
chr2 94Mb AL137070.9      
NA RP11-252A24 C 16q21-16q22,16p13.1-16p13.2,16q13-16q21,16p11.2-16p12(FHCRC)
chr16 72Mb AC009053.7   AQ491015.1 T7,
AZ517393.1 SP6
 
NA RP11-261P4 C Xp22.3,Yp11.2-Yp11.3(FHCRC)
chrX 1Mb AC083998.1,
AL683870.15
    multiple_placements_on_genome
NA RP11-261P4 C Xp22.3,Yp11.2-Yp11.3(FHCRC)
chrY 1Mb AC083998.1,
AL683870.15
    multiple_placements_on_genome
NA RP11-264E23 C 16p13.3,7q22,3q13.3-3q21,8p23,9q22,3p25-3p26,12p13,11q13,11p15,3p12-3p13,4p16,7p22(FHCRC)
chr4 9Mb AC097493.3      
NA RP11-264M14 C 2p11.1-2q11.1,15q11.2,16p11.2(FHCRC)
chr16 33Mb AC092342.3   AQ486553.1 T7,
AQ486552.1 SP6
 
NA RP11-265F15 C 7q22,7q36.2(FHCRC)
chr1 15Mb AC009056.5 SHGC-3342*d AQ484034.1*u T7 multiple_placements_on_genome
NA RP11-265F15 C 7q22,7q36.2(FHCRC)
chr8 28Mb AC009056.5*d SHGC-3342 AQ484034.1*u T7 multiple_placements_on_genome
NA RP11-271M1 S 16p13.3,7q22,3q13.3-3q21,8p23,9q22,3p25-3p26,12p13,11q13,13q21,11p15,3p12-3p13,4p16,7p22(FHCRC)
chr10 15Mb AL157391.11   AQ491664.1 SP6  
NA RP11-286G23 C 9p12,9q12(FHCRC)
chr9 44Mb AC011967.4      
NA RP11-288C18 C 2p22,2p11.1-2p11.2(FHCRC)
chr2 36Mb AC007382.3 SHGC-36905    
NA RP11-28A18 C 2q11.2,12q24.2(FHCRC)
chr12 117Mb AC068796.16 SHGC-20790 B87181.1 T7,
B87180.1*u SP6
 
NA RP11-291L22 C 16q24,Yq11.23,19p13.3,1q22,1q41,1q43,7p11.2,1p36.3,7p22,4q25,6p25,7q32,5q35,3q29,9q34.3,10p11.2,20p13,11p15.5(FHCRC)
chr10 38Mb AL133216.10      
NA RP11-297J4 C 1q41,11q24(FHCRC)
chr1 212Mb AC025222.3*u   AQ505767.1 T7,
AQ505765.1 SP6
 
NA RP11-2A18 S 2q36,9p21.3-9p23(SC)
chr9 15Mb AL137126.14      
NA RP11-2L10 C 12q12,3p25-3p26,1p36.2,13q33(FHCRC)
chr13 102Mb AC015789.3 SHGC-2173 AQ316625.1 SP6,
B48610.1 T7
 
NA RP11-301J16 S Yq12,13q11-13q12.13(SC)
chr13 18Mb AL137001.23      
NA RP11-304L19 C 16p12,16p13.2(FHCRC)
chr16 2Mb AC009065.8      
NA RP11-308K19 S 4q27-4q28.1,10p12.31-10p14(SC)
chr10 13Mb AC074244.3,
AL365495.14
     
NA RP11-311A12 S 3q26-3q26.32,9p23-9p24.3(SC)
chr9 13Mb AL138750.12      
NA RP11-313I2 C 11p11.2,11q14(FHCRC)
chr11 88Mb AC024234.5,
AP003122.2
  AQ506046.1 SP6  
NA RP11-318K12 S 14q11.1-14q11.2,13q11-13q12.11,15q11.1-15q11.2,18cen,9p11.1-9p12,20q11.1-20q11.21,21q11.1-21q11.2,2cen,9q13-9q21.12,2q21.1-2q21.3,22q11.1-22q11.21(SC)
chr9 66Mb AC090986.4,
AL353626.5
  AQ536322.1 SP6,
AQ536324.1 T7
multiple_placements_on_genome
NA RP11-318K12 S 14q11.1-14q11.2,13q11-13q12.11,15q11.1-15q11.2,18cen,9p11.1-9p12,20q11.1-20q11.21,21q11.1-21q11.2,2cen,9q13-9q21.12,2q21.1-2q21.3,22q11.1-22q11.21(SC)
chrY 57Mb AC090986.4*d,
AL353626.5*d
  AQ536322.1 SP6,
AQ536324.1*d T7
multiple_placements_on_genome
NA RP11-324K20 C 16q24,Yq11.23,19p13.3,1q41,7p11.2,1q44,1p36.3,7p22,6p25,7q32,5q35,3q29,9q34.3,10p11.2,7q11.1-7q11.2,20p13,12p13,20q13.3,11p15.5(FHCRC)
chr5 180Mb AL161615.3      
NA RP11-325K2 S 9p21.3-9p22.3,16p11.2-16p12.3(SC)
chr9 16Mb AL358117.11   AQ536942.1 SP6  
NA RP11-327I12 C 2p24-2p25,10q25(FHCRC)
chr10 110Mb AC024117.1      
NA RP11-32E24 S Yp11.2,Xq28(SC)
chrX 154Mb AL158818.4*u   AQ046835.1  
NA RP11-337D5 C 2q23,2q12-2q13,2p11.2(FHCRC)
    AC013464.6*u RH11823*u, RH26323*u, SHGC-3180*u    
NA RP11-33B1 C 16q24,19p13.3,3q29,7q11.1-7q11.2,9q34.3,10p11.2,1q41,4q26-4q27,1q43,7p11.2,1p36.3,11p15.5(FHCRC)
chr4 120Mb AC093752.2   AQ046886.1  
NA RP11-340A14 C 7q22,7q11.23(FHCRC)
chr7 75Mb AC007078.4   CL250832.1 SP6  
NA RP11-341D18 S 2p11.2-2p12,22cen,13cen(SC)
chr13 0Mb AL356585.7   AQ540401.1 T7  
NA RP11-343N15 S 1cen,1q32.2-1q41(SC)
chr1 120Mb AL358175.18      
NA RP11-348G16 C 2p11.2,2q13(FHCRC)
chr2 108Mb AC010095.6   AQ528450.1 SP6,
AQ528452.1 T7
 
NA RP11-34G16 C 2q11.2,2q13-2q14.1(FHCRC)
    AC008268.3*u SHGC-33780*u AQ046322.1*u  
NA RP11-350E12 S 9q12,9p12-9p13.2,9q21.31-9q22.1(SC)
chr9 89Mb AL353572.13   AQ529936.1 T7,
AQ529933.1 SP6
 
NA RP11-350J20 CS 6p21.2-6p21.33,6q24.1-6q25.1(SC)
    AL355312.24*u      
NA RP11-353N4 S 1p12,1q12-1q21.2,1p11.1,1p35.3-1p36.13(SC)
chrY 57Mb AL358813.13*u   AQ530477.1 T7,
AQ530475.1*u SP6
 
NA RP11-358B14 C 16q22-16q23,16p11.2-16p12,16p12-16p13.1,18p11.1-18p11.2(FHCRC)
chr18 11Mb AC022030.2   AQ542220.1 T7,
AQ542217.1 SP6
 
NA RP11-35B4 C 1q21,1p35-1p36.1,1p12(FHCRC)
chr1 143Mb AL359093.9   AQ046057.1  
NA RP11-361F15 S 6q24.1-6q24.3,6p21.1-6p21.31(SC)
chr6 147Mb AL355365.10   AQ542104.1 SP6,
BH608566.1 SP6,
BH608565.1 T7,
AQ542106.1*u T7
 
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
NA RP11-366C6 C Yq11.2,8p22-8p21,1q32(FHCRC)
chr1 200Mb AC015973.2      
NA RP11-368B4 C 4p16.3,1q12(FHCRC)
chr4 4Mb AC015709.3      
NA RP11-384I6 S 1q25.2-1q31.2,1q43-1q44(SC)
chr1 240Mb AC092016.2   AQ534175.1 SP6,
AQ534176.1*u T7
 
NA RP11-384K6 C 16p13.3,16q24,19p13.3,1q41,1q43,7p11.2,7q11.2,1p36.3,7p22,Yq11.2,4q26,7q32,8p23,2q37.3,5q35,3q29,6q27,9q34.3,10p11.1,20p13,20q13.3,11p15(FHCRC)
chr4 119Mb AC110079.3   AQ534198.1 T7,
AQ534197.1 SP6
 
NA RP11-388B24 S 9p12-9p13.3,9q21.2-9q22.1(SC)
chr9 83Mb AL158047.9      
NA RP11-38L15 S 10q23.1-10q23.33,10q11.21-10q11.23(SC)
chr10 46Mb AL356056.22      
NA RP11-38P6 S 9p11.1-9p13.2,9q12-9q13(SC)
chr9 67Mb AL354874.14      
NA RP11-390E9 C Xq21,Yp11.3(FHCRC)
chrY 3Mb AC011305.2      
NA RP11-395E19 S 9p11.2-9p13.2,9q22.2,9q12-9q13(SC)
chr9 40Mb AL353770.18      
NA RP11-395L14 C 16p13.3,19p13.3,15q26,17q25,19q13.4,2q14.1,1p36.3,7p22,9p12,6p25,8p23,9q13,3q29,9p24,6q27,9q34,20p13,12p13,20q13.3,11p15,22q13.3,10q26(FHCRC)
chr2 113Mb AL078621.19     multiple_placements_on_genome
NA RP11-395L14 C 16p13.3,19p13.3,15q26,17q25,19q13.4,2q14.1,1p36.3,7p22,9p12,6p25,8p23,9q13,3q29,9p24,6q27,9q34,20p13,12p13,20q13.3,11p15,22q13.3,10q26(FHCRC)
chrY 57Mb AL078621.19     multiple_placements_on_genome
NA RP11-397E13 C 2p11.2,2q13(FHCRC)
chr2 112Mb AC069171.2 SHGC-35119*u    
NA RP11-3A5 C 11p11.1-11p11.2,11q14.3(FHCRC)
chr11 88Mb AC021984.2*u SHGC-5997 B47879.1 T7,
B47878.1 SP6
 
NA RP11-400J9 C 9p12,10p11.2,2p11.1-2p11.2,10q11.2,1q12,22q11.2,9q12-9q13,14q11.2,7p11.2,15q11.2,16p11.2,7q11.2,17p11.2,17q11.2(FHCRC)
chr2 91Mb AC010098.7      
NA RP11-402H23 S 1q42.11-1q42.3,7cen-7p11.2(SC)
chr1 226Mb AL356323.15      
NA RP11-405L18 S 9p22.1-9p23,9p12-9p13.3(SC)
chr9 37Mb AL158156.7      
NA RP11-407J2 C 7q22,7q11.2(FHCRC)
chr5 58Mb AC022375.2      
NA RP11-413E6 C 16p13.3,15p11.1-15q11.1,3q13.3-3q21,Yp11.1-Yq11.1,3p25-3p26,1q21,9p12-9p13,9q12-9q13,4p16,7p22,7q22,8p23,4q35,19q13.3-19q13.4,9q22,20p11.1-20q11.1,10p12,21p11.1-21q11.1,21p13,12p13,11q13,13p13,22p11.1-22q11.1,11p15,14p13,13p11.1-13q11,15p13,14p11.1-14q11.(FHCRC)
chr3 75Mb AC012661.4,
AC108724.4
     
NA RP11-414G18 S 10p14,6q22.2-6q22.33(SC)
chr6 124Mb AL356605.20      
NA RP11-421G7 S 2p14-2p15,13q21.1-13q21.2(SC)
chr13 59Mb AL138705.8      
NA RP11-431N15 CRS Xq12-Xq13,Xp11.2(FHCRC)
chrX 56Mb AL354793.11 RH25723 AZ254513.2 T7,
AZ254514.2 SP6
 
NA RP11-439L24 C Yp11.3,Xq21(FHCRC)
chrY 3Mb AC010737.4 DXYS2 AZ254518.2 SP6,
AZ254517.2 T7
 
NA RP11-446K10 C 5q12,19q13.1-19q13.2(FHCRC)
chr19 44Mb AC020715.4      
NA RP11-446K8 C Xp22.3, Yp11.3(FHCRC)
chrX 1Mb AC084231.1,
AL683875.25
    multiple_placements_on_genome
NA RP11-446K8 C Xp22.3, Yp11.3(FHCRC)
chrY 1Mb AC084231.1,
AL683875.25
    multiple_placements_on_genome
NA RP11-449K24 C 16p11.2,16p12(FHCRC)
chr16 21Mb AC017077.5   AQ584046.1 SP6,
AQ584050.1 T7
 
NA RP11-44F14 C 16q12.1,5q13(LANL)
chr16 51Mb AC007342.6 Bda63b12 AQ200132.1  
NA RP11-452L16 C 2p11.1-2p11.2,2q11.1-2q11.2,15q11.1-15q11.2,16p11.1(FHCRC)
chr15 18Mb AC018963.7   AQ583938.1 T7  
NA RP11-453N3 C 9p12,9q12,10p11.1-10p11.2,2p11.1-2q11.1,14p11.1,22q11.1,14p11.2,16p11.1,15q11.1(FHCRC)
chr10 38Mb AL133173.20      
NA RP11-456N16 C 16q23,19p13.1,16p12(FHCRC)
chr7 35Mb AC006379.2      
NA RP11-462G22 C 4q35,14p11.2(FHCRC)
chr4 190Mb AC018687.6      
NA RP11-463M3 CS 13q12.11-13q12.2,6p24.1-6p25.3(SC)
chr13 20Mb AL139380.6 RH44200    
NA RP11-464D20 C 17q23,7q31.3-7q32(FHCRC)
chr17 57Mb AC008026.7      
NA RP11-467H10 C 7q22,7q11.23(FHCRC)
chr7 76Mb AC007000.2   AQ630967.1 T7,
CL246312.1 T7,
CL250829.1 SP6,
AQ630965.1 SP6
 
NA RP11-46M12 R 15q15,15q25(FHCRC)
chr15 39Mb AC012652.7,
AC099819.1
  AQ201188.1 ,
AQ201186.1
 
NA RP11-473N15 S Xq27.1-Xq27.3,Xq22.3-Xq24(SC)
chrX 110Mb AL357774.11      
NA RP11-479C13 C 7q22,7q11.2,7p22(FHCRC)
chr7 71Mb AC005236.4   AQ636718.1 T7,
CG876933.1 T7,
BZ724411.1 SP6,
AQ636715.1*u SP6
 
NA RP11-47F2 C Yq11.2,7q31,5p15.3,8p23,6p25,2q37,16q24,9q31,19p13.3,3q29,1q41,11p15,1q43,1p36(FHCRC)
chr2 242Mb AC084227.3, AC134877.1*u   AQ194062.1 ,
AQ194041.1
 
NA RP11-480C16 C 9p13,8q21.3,2q11.2,9q13,9q22,2q14.3(FHCRC)
chr2 113Mb AC016745.6      
NA RP11-497C14 C Yq11.2,15q25(FHCRC)
chrY 26Mb AC007562.4      
NA RP11-497H16 C 6p25,5q12,5p14(FHCRC)
chr5 69Mb AC011244.4,
AC146944.1
     
NA RP11-506M12 C 7q22,7q11.2(FHCRC)
chr7 99Mb AC073842.5      
NA RP11-509A17 C 17q25.3,2p11.2,1q21,17q22-17q23,2p24,9p12,9q12,9q13,10p11.1-10p12,2p11.1-2p11.2,22q11.2,13q12,2q11.2-2q12,14q11.2,15q11.2,16p11.2(FHCRC)
chr15 18Mb AC026495.13      
NA RP11-528K16 C 16q24,16p11.2(LANL)
chr16 28Mb AC007615.6 SHGC-58117*u    
NA RP11-539D10 C Yq11.2-Yq12,Yp11.2-Yp11.3(FHCRC)
chrY 25Mb AC006338.6      
NA RP11-542J23 C 1p12,1q12,19p13.3,1p36.1,3p25-3p26(FHCRC)
chr1 143Mb AC024119.2      
NA RP11-546N8 C 11p11.2,11q14(FHCRC)
chr11 88Mb AC026201.3,
AP003178.1
     
NA RP11-553E2 S 9p13-9p21.1,9q22-9q32(SC)
chr9 98Mb AL360016.10      
NA RP11-554P16 S Xq26.3-Xq27.1,Xp11.1-Xp11.3(SC)
chrX 50Mb AL359272.9      
NA RP11-555K2 C 9p12,4q35,14p11.1-14p11.2,9q12,4q28,21q11.1-21q11.2,13p11.1-13p11.2(FHCRC)
chr4 0Mb AC018692.9      
NA RP11-577O18 C 16p13.3,7q22,3q13.3-3q21,2q24-2q31,8p23,9q22,3p25-3p26,10p15,13q21,11p15,2p12-2p13,7q11.2,11q12-11q13,3p12-3p13,4p16,7p22(FHCRC)
chr7 6Mb AC079882.6   AQ333360.1 SP6  
NA RP11-598C10 S 1q22-1q24.3,10q21.1-10q21.2(SC)
chr10 56Mb AL355314.10   AQ340225.1 T7,
AQ339516.1*u SP6
 
NA RP11-59J12 C 8p11.1-8p11.2,1q43(FHCRC)
chr10 38Mb AL132658.10   AQ200030.1  
NA RP11-61I9 C 4q21,3p26(FHCRC)
chr3 6Mb AC026205.6   AQ237646.1 SP6  
NA RP11-642E22 C 4q26,19p13.2,16q24,3q29,9q34,10p11.2,20p13,1q41,1q43,7p11.2,1p36,11p15.5(FHCRC)
chr3 8Mb AC022009.2,
AC024169.3
  AQ402615.1*d T7,
AQ402911.1*d SP6
multiple_placements_on_genome
NA RP11-642E22 C 4q26,19p13.2,16q24,3q29,9q34,10p11.2,20p13,1q41,1q43,7p11.2,1p36,11p15.5(FHCRC)
chr3 10Mb AC022009.2*d,
AC024169.3*d
  AQ402911.1 SP6,
AQ402615.1 T7
multiple_placements_on_genome
NA RP11-65I12 CR 2q11.2,2q13(FHCRC)
chr2 113Mb AC016683.7 SHGC-20032 AQ241116.1 SP6,
AQ200816.1
 
NA RP11-669E14 C 4q26,16q24,5q35,3q29,1q41,9q34,1q43,7q11.2,7p12,1p36,11p15.5,10p11.2,7p22(FHCRC)
chr17 41Mb CR936218.6, AC026625.1*u   AQ610287.1 T7,
AQ431583.1 SP6
 
NA RP11-66G15 S 15q26.2-15q26.3,13q31.1-13q31.3(SC)
chr13 91Mb AL354871.12   AQ195072.1 ,
AQ238909.1 T7
 
NA RP11-66N16 C 12q22-12q23.1,1q24(FHCRC)
chr12 99Mb AC010204.19 SHGC-15767 AQ238411.1 SP6,
AQ238414.1 T7
 
NA RP11-687L3 C 6q21,6q22(FHCRC)
chr6 107Mb AC016916.4 H59915*d   multiple_placements_on_genome
NA RP11-687L3 C 6q21,6q22(FHCRC)
chrY 19Mb AC016916.4*d H59915   multiple_placements_on_genome
NA RP11-688N14 C 19p13.2,16q24,15q26,1q41,7p11.2,1q43,7q11.2,7p12,1p36,4q32,7p22,Yq11.2,4q26,6p25,7q32,8p23,2q37.3,5q35,3q29,6q27,9q22,9q34.3,10p11.2,20p13,20q13.3,11p15.5(FHCRC)
chr11 123Mb AP000825.2      
NA RP11-68E19 C 2p11.2,2q13(FHCRC)
chr2 111Mb AC017002.4 SHGC-6679 AQ236759.1 SP6,
AQ236761.1 T7
 
NA RP11-691I13 S 9p13.1-9p21.1,10p11.21-10p12.1(SC)
chr10 28Mb AL355372.15   AQ408774.1 SP6  
NA RP11-730J6 C 19p13.2,15q26.3,1q41,7p11.2,1q43,7q11.2,1p36,7p22,4q34.1,Yq11.2,6p25,8p23,2q37.3,5q35,7q33,3q29,4q28,9p24,6q27,9q34.3,10p11.2,20p13,20q13.3,11p15.5(FHCRC)
chr3 99Mb AC117473.3   AQ456595.1*u T7  
NA RP11-756A22 S 13q12.11-13q12.3,13p11.1-13p11.2(SC)
chr13 24Mb AL354798.13   AQ460829.1 T7,
AQ457345.1 SP6
 
NA RP11-758A3 S Xq25,Xp11.3-Xp21.1(SC)
chrX 41Mb AL365196.2      
NA RP11-77P19 C 2p11.1-2p11.2,21q11.1,22q11.1,13q11,14q11.1,21q21,2q22,15q11.1,18p11.2(FHCRC)
chr13 17Mb AL138715.11   AQ284570.1 SP6,
AQ284571.1 T7
 
NA RP11-793L10 S 6q16.2-6q21,5q34-5q35.2,21q22.3(SC)
chr6 102Mb AL357139.11      
NA RP11-799H15 C 8p23,5q35,19p13.3,15q26,3q29,6q27,9q34.3,1p36,11p15.5(FHCRC)
chr11 7Mb AC022998.3 SHGC-30914 AQ525486.1 SP6,
AQ556277.1*u T7
 
NA RP11-79C9 C 16p12,16p11.2(FHCRC)
chr16 18Mb AC139281.1*d   AZ520687.1 SP6,
AQ282241.1 SP6,
AQ282243.1*d T7
multiple_placements_on_genome
NA RP11-79C9 C 16p12,16p11.2(FHCRC)
chr16 15Mb AC139281.1   AQ282243.1 T7,
AZ520687.1 SP6,
AQ282241.1 SP6
multiple_placements_on_genome
NA RP11-79G14 C 11p11.2,11q12(FHCRC)
chr11 54Mb AC069532.8   AQ282664.1 T7,
AQ629617.1 T7,
AZ519168.1 SP6,
AQ581369.1 SP6,
AQ282663.1 SP6
 
NA RP11-79I20 C 2p24,6p22(FHCRC)
chr6 22Mb AC073952.3*d   AQ629641.1 T7 multiple_placements_on_genome
NA RP11-79I20 C 2p24,6p22(FHCRC)
chr2 10Mb AC073952.3   AQ629641.1*d T7 multiple_placements_on_genome
NA RP11-802L12 S 22q11.1-22q11.23,6p22.3-6p23(SC)
chr6 17Mb AL359700.14      
NA RP11-816C16 C 8p23,5q35,19p13.3,15q26,3q29,6q27,9q34.3,1p36,11p15.5(FHCRC)
chr11 4Mb AC023400.3   AQ515938.1 SP6  
NA RP11-81H20 C 2p22,2p11.2(FHCRC)
chr2 37Mb AC016689.4 SHGC-13870, SHGC-12924    
NA RP11-81J17 C 18q12.1,2q21(FHCRC)
chr18 30Mb AC107458.1   AQ281793.1 SP6,
AQ281796.1 T7
 
NA RP11-85C8 C 15p11.1-15p11.2,Yp11.1-Yp11.2,1q12,2p13,3q11.2,4p16.3,9p12,9q12,21p11.1-21p11.2,2q11.1-2q11.2,20q11.1-20q11.2,21p13,13p13,13p11.1-13p11.2,22p11.1-22p11.2,14p13,15p13,4p11-4q11,14p11.1-14p11.2(FHCRC)
chr4 0Mb AL354817.7      
NA RP11-86F24 CS 1p21,13q12-13q13.3(SC)
chr1 100Mb AC093428.2 H07071    
NA RP11-89B7 C 16p11.2,16p12(FHCRC)
    AC106826.1*u   AQ283626.1*u SP6,
AQ283628.1*u T7,
AZ517719.1*u T7
 
NA RP11-89F3 C 1p12,1q12,1p36.2(FHCRC)
chr1 146Mb BX546486.21   AQ283821.1 T7,
AQ283820.1 SP6
 
NA RP11-91B9 C 20q12,1q32(FHCRC)
chr1 201Mb AL391817.18      
NA RP11-91G11 C 1p12,1q12,5q11.2,1p36.1(FHCRC)
chr1 146Mb AL691471.3*d   AQ281372.1 SP6,
AQ281375.1*d T7
multiple_placements_on_genome
NA RP11-91G11 C 1p12,1q12,5q11.2,1p36.1(FHCRC)
chr1 146Mb AL691471.3   AQ281375.1 T7,
AQ281372.1*d SP6
multiple_placements_on_genome
NA RP11-95A21 C 1p21,5q14(FHCRC)
chr5 85Mb AC091994.1 SHGC-36370*u AQ312081.1 T7,
AQ312079.1 SP6
 
NA RP11-95F11 C 6p25,15q25,5q35,3q29,15q26.3,6q27,19q13.4,15q12,11p15.5,1p36.3(FHCRC)
chr15 100Mb AC055861.2   AQ314852.1 SP6  
NA RP11-95J1 C 4q28,4q12(FHCRC)
chr4 142Mb AC097475.2 SHGC4-1584 AQ314902.1 SP6,
AQ314907.1 T7
 
NA RP11-96F3 C 6q25,20q13.3,12p13.3(FHCRC)
    AC021585.7*u,
AL607068.10*u
  AQ313747.1*u SP6,
AQ313750.1*u T7
 
NA RP13-118G24 S Xp11.23-Xp11.4,1q32.1-1q32.2(SC)
chrX 43Mb AL355575.5      
NA RP13-136L2 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 91Mb AL136362.10      
NA RP13-138P15 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 91Mb AL121869.19      
NA RP13-13L21 S 13q11-13q12.2,Xq26.1-Xq27.2(SC)
chrX 135Mb AL356783.20      
NA RP13-140E4 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 89Mb AL121877.14      
NA RP13-159P11 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 89Mb AL135781.8      
NA RP13-17E1 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 91Mb AL133321.11      
NA RP13-212L9 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 90Mb AL121823.12      
NA RP13-21D1 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 89Mb AL133328.13      
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
NA RP13-258O15 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 91Mb AL121871.8      
NA RP13-310B24 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 88Mb AL157779.6      
NA RP13-348B13 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 88Mb AL121872.12      
NA RP13-362E11 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 89Mb AL121873.15      
NA RP13-448I11 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 89Mb AL133409.14      
NA RP13-73G13 S Yp11.31-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 88Mb AL136111.10      
NA RP13-88F20 S Yp11.2-Yp11.32,Xq21.2-Xq21.33(SC)
chrX 92Mb AL359263.13      
NA RP13-94P8 S Yp11.31-Yp11.32,Xq21.31-Xq21.33(SC)
chrX 91Mb AL133274.8      
NA RP3-322E17 S 1p36.11-1p36.23,1p12-1p13.2,1q12-1q21.2(SC)
chr1 143Mb AL109937.4      
NA RP3-368B9 S 9q12,9p11.1-9p12,4p16.1-4p16.3(SC)
chr4 3Mb AL121796.17      
NA RP3-401D24 S 3cen-3p11.2,6cen-6q12(SC)
chr6 57Mb AL137184.15      
NA RP3-404P13 S 12q12-12q13.13,22q13.2(SC)
chr22 46Mb AL035069.5      
NA RP3-414L4 S 10q23,6q25.1-6q26(SC)
chr6 155Mb AL139101.13      
NA RP3-437C15 S 16cen,6cen-6p12.1(SC)
chr6 51Mb AL158050.8      
NA RP3-447N6 S Xq24-Xq25,Xq22,Xp11,Xq21.1(SC)
chrX 57Mb Z82211.1      
NA RP3-462D8 S 11q13.1-11q13.4,22q11.21-22q12.1(SC)
chr22 23Mb AL022332.2      
NA RP3-481A17 S Xq24-Xq25,Xq21-Xq22,Xp11,Xq21.1(SC)
chrX 75Mb Z82212.3      
NA RP3-496C20 S 22q12.3-22q13.1,22q13.1(SC)
chr22 38Mb Z83847.1      
NA RP4-538N4 S 1p21.1-1p21.3,1p13.1-1p13.3(SC)
chr1 97Mb AC099787.2      
NA RP4-555J6 S 1p12-1p13.2,1q12-1q21.3(SC)
chr1 223Mb AL162738.12      
NA RP4-565E6 S 1p12-1p13.2,1p22.2-1p31.1,1q12-1q21.1,1p35.1-1p36.23(SC)
chr1 144Mb AL049742.8      
NA RP4-579N16 S 22p11.1-22cen,22cen-22q11.21,22q13.2-22q13.33(SC)
chr22 49Mb AL096767.14      
NA RP4-609N19 C 2q13-2q14,16q24,15q26.1,19p13.3,1q41,7p11.2,1q43,1p36,Yq11.2,6p25,2q37,4q26,8p23,5q35,3q29,9p24,6q27,9q34,10p11.1-10q11.1,20p13,22p11.1-22q11.1,20q13.3,11p15(FHCRC)
chr6 0Mb AC004842.2      
NA RP4-610C12 S 20p11.1-20p11.21,9q11-9q12,20q11.1-20q11.22,9p11.1-9p12(SC)
chr20 28Mb AL121762.13      
NA RP4-636L22 S 1p12-1p13.2,1q12-1q21.2,1q32.1-1q32.3(SC)
chr1 0Mb AL109844.14      
NA RP4-640F2 S 7q11.22-7q21.11,1p22.2-1p31.1,1p32.1-1p32.3,6p22.3-6p24.1(SC)
chr1 64Mb AL355515.12      
NA RP4-646P11 S 1p12-1p31.2,1q12-1q21.2,1p36.11-1p36.31(SC)
chr1 143Mb AL049715.26      
NA RP4-651A20 S 7cen,20q13.13-20q13.32(SC)
chr20 49Mb AL356354.10      
NA RP4-679C16 S 1p36.13-1p36.31,1q22-1q23.3(SC)
chr1 144Mb AL138842.15      
NA RP4-686J16 S 10q25.3-10q26.2,10q23.31-10q24.33,1p32.3-1p33(SC)
chr1 116Mb AL356748.20      
NA RP4-691G10 S 1q12-1q21.2,1cen-1p13.1,1p36.11-1p36.13(SC)
chr1 147Mb AL162612.4      
NA RP4-710H13 S 20q11.2,20q13.11-20q13.2(SC)
chr20 47Mb AL121712.27      
NA RP4-725K1 S 1q12-1q21.2,1cen(SC)
chr1 143Mb AL138791.14      
NA RP4-746H2 S 20q12,20p11.1-20p11.23(SC)
chr20 20Mb AL109953.24      
NA RP4-760C5 S 7p11.1-7p11.2,20p11.1-20p11.22,20q11.1-20q11.22(SC)
chr20 25Mb AL078587.18      
NA RP4-791M13 S 1p36.13-1p36.31,1cen,1q22-1q23.2(SC)
chr1 143Mb AL138796.6      
NA RP4-796I17 S 4q35.1-4q35.2,22q13.2-22q13.32(SC)
chr22 42Mb AL035398.19      
NA RP4-798A10 S 1p36.11-1p36.23,1q21.1-1q21.3(SC)
chr1 16Mb AL137802.7      
NA RP4-800D18 S 1p21.1-1p21.3,1p31.1-1p31.3(SC)
chr1 76Mb AL139155.3      
NA RP5-1074I8 S Xq13.1-Xq21.1,19q13.13-19q13.31(SC)
chrX 82Mb AL158143.14      
NA RP5-1077B9 S 1q21.1,1p36.11-1p36.32(SC)
chr1 11Mb AL096840.25      
NA RP5-1093P10 S 1q12-1q21.2,1p36.2,1p11.1-1p12(SC)
chr1 146Mb AL355866.2      
NA RP5-1099D15 S 20p12.1-20p12.3,6q22.33-6q24.1(SC)
chr20 10Mb AL035456.26      
NA RP5-1129D5 C Yq11.2,15q26.1(FHCRC)
chr15 80Mb AC005630.1      
NA RP5-1182A14 S 1p36.13-1p36.31,1q21.1-1q21.3(SC)
chr1 16Mb AL137798.8      
NA RP5-831C21 S 20p11.1-20p11.21,22q11.21(SC)
chr20 23Mb AL133466.22      
NA RP5-850N15 S 20p11.21-20p11.23,10p11.22-10p12.33(SC)
chr20 23Mb AL121831.19      
NA RP5-855D21 C 16q24,19p13.3,15q26,1q42,1p36,1q44,8p23,2q37,4q26,6p25,5q35,3q29,6q27,9q34,20p13,11p15(FHCRC)
chr8 0Mb AC004908.1      
NA RP5-891L14 C 1q41,7p11.1,1q43(FHCRC)
chr1 226Mb AC004916.2      
NA RP5-961K14 S Xq22.1-Xq23,1p31.3-1p32.3(SC)
chrX 95Mb AL137845.9      
NA RP5-998H6 S 12q13.11-12q13.12,20q13.1(SC)
chr20 44Mb AL031687.17      
NA RP5-998N21 S 1q12-1q21.1,1cen,1q32.1-1q32.3(SC)
chr1 147Mb AL109948.9      
total237C:123 R:3 S:117237231 2372995 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.