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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
NA CTA-923A4 C 16q23,16p12-16p13.1,16p12.3-16p13.1(LANL)
chr16 20Mb   s315D8 B73646.1 T7,
B73645.1 SP6,
B14464.1*u SP6,
B14465.1*u T7,
B16347.1*u SP6,
B16348.1*u T7
 
NA CTB-13D16 R Yp11.3,Xp22.1(CSMC)
chrX 6Mb   AFMA137XG9   multiple_placements_on_genome
NA CTB-13D16 R Yp11.3,Xp22.1(CSMC)
chrY 15Mb   AFMA137XG9   multiple_placements_on_genome
NA CTB-13M4 R 3p21.3,3p23(CSMC)
chr3 37Mb   AFMB286YB1    
NA CTB-18P10 R 7q22,7q32(CSMC)
chr7 134Mb   EST91382, UTR-01656    
NA CTB-22F17 R 1p31.2,1p22(CSMC)
      AFMA107YA9*u, D1S2614*u    
NA CTB-53P14 R 11q23.3-11q24,11q23.1(CSMC)
chr11 120Mb   AFMA162WF5    
NA CTB-7H23 R 7q22,7q11.23(CSMC)
      D7S1778*u    
NA CTB-9B3 1p12-1cen(CSMC)
chr1 118Mb   AFMA226WA9    
NA CTC-839D20 Ypter,Xpter(UChicago)
chrX 0Mb   DXYS129   multiple_placements_on_genome
NA CTC-839D20 Ypter,Xpter(UChicago)
chrY 0Mb   DXYS129   multiple_placements_on_genome
NA CTD-2018M10 C 1p12,1q21.1(FHCRC)
chr1 147Mb   Hs.113980   multiple_placements_on_genome
NA CTD-2018M10 C 1p12,1q21.1(FHCRC)
chr1 147Mb   Hs.113980   multiple_placements_on_genome
NA RP11-101E9 C 7q22,7p22,7q11.2(FHCRC)
chr7 99Mb   SHGC-5617 AQ311852.1 T7,
AQ346310.1 SP6
 
NA RP11-106K13 C 4q35,21q11.2(FHCRC)
chr21 15Mb   SHGC-31616 AQ315211.1 SP6  
NA RP11-107C1 C 8q24.2,8q21.1(FHCRC)
chr8 82Mb   AFM185XE9 AQ318947.1 SP6,
AQ318950.1 T7
 
NA RP11-109H7 C 18q22.1,14q11.2(FHCRC)
chr14 19Mb   SHGC-1402, SHGC-31518    
NA RP11-111A8 C 17p11.2,13q33(FHCRC)
chr13 104Mb AC027145.1*u SHGC-20838 AQ350825.1 T7,
AQ322117.1 SP6
 
NA RP11-112L19 C Yp11.3,Xp22.3(FHCRC)
chrY 2Mb   DYS242, DYS250 AQ343336.1 T7  
NA RP11-114G11 C 7p11.1-7p11.2,7q11.1-7q11.2(FHCRC)
chr7 57Mb AC073057.6 AFM165ZF4 AQ344795.1 T7,
CG784124.1 T7,
CG784125.1 SP6,
AQ344793.1 SP6
 
NA RP11-125N16 C 7p14,7p11.2-7p12(FHCRC)
chr7 39Mb   AFM095XE9, AFM095XE9*u, AFM095XE9*u AQ345016.1 SP6,
AQ345018.1 T7
 
NA RP11-126O12 C 1p36.1,1q21,1p13(FHCRC)
chr1 146Mb   SHGC-11828   multiple_placements_on_genome
NA RP11-126O12 C 1p36.1,1q21,1p13(FHCRC)
chr7 55Mb   SHGC-11828   multiple_placements_on_genome
NA RP11-12D5 C 6p24,Xp21(FHCRC)
chrX 27Mb AC021710.4,
AC112492.3
SHGC-21210 B74960.1 SP6  
NA RP11-131O14 C 1p31.3,4q13.3-4q21(FHCRC)
chr4 78Mb   SHGC-24762    
NA RP11-132H11 C Yp11.3,Xp22.3(FHCRC)
chrX 1Mb   SHGC-1094   multiple_placements_on_genome
NA RP11-132H11 C Yp11.3,Xp22.3(FHCRC)
chrY 1Mb   SHGC-1094   multiple_placements_on_genome
NA RP11-13G8 C 10q21.1,13q14.1(FHCRC)
chr10 55Mb AC016817.6 SHGC-36014 B82214.1 T7  
NA RP11-141H6 C 11p11.1-11p11.2,11q14.3(FHCRC)
chr11 88Mb   SHGC-5997 AQ388195.1 T7,
AQ388189.1 SP6
 
NA RP11-14K1 C 7p14-7p15,22q11.2,7p21,16p13.2(FHCRC)
chr7 15Mb   AFMA067WD5, AFMA067WD5*u B75243.1 T7  
NA RP11-15D18 C 11q22.1,11p15.5(FHCRC)
chr11 5Mb AC011647.9 SHGC-10494 B76389.1 T7,
B76388.1 SP6
 
NA RP11-15K19 C 7q11.22,7p11.2(FHCRC)
chr7 55Mb AC092579.3 SHGC-17265 B83542.1 T7,
CG784134.1 T7,
CG784135.1 SP6,
B76521.1 SP6
 
NA RP11-178M6 C Yq11.23,Yp11.2(FHCRC)
chrY 22Mb   DYS258   multiple_placements_on_genome
NA RP11-178M6 C Yq11.23,Yp11.2(FHCRC)
chrY 9Mb   DYS258   multiple_placements_on_genome
NA RP11-17C13 C 7p14,8q21.3(FHCRC)
chr7 30Mb   AFM198ZE5, AFM198ZE5*u, AFM198ZE5*u    
NA RP11-194F21 C 7q33-7q34,14q32.2(FHCRC)
chr12 25Mb   SHGC-34616*d AQ629759.1 T7 multiple_placements_on_genome
NA RP11-194F21 C 7q33-7q34,14q32.2(FHCRC)
chr14 100Mb   SHGC-34616 AQ629759.1*d T7 multiple_placements_on_genome
NA RP11-196H10 C 3q13.33,8q11.1(FHCRC)
chr8 56Mb   SHGC-5783 AQ415056.1 SP6,
AQ415058.1 T7
 
NA RP11-216O19 C 8p22,6p25,3p12,11q13,2q22,3q21,11p15,2p16,4p16(FHCRC)
chr11 70Mb   SHGC-12671    
NA RP11-217P16 C 2p11.2,2q13(FHCRC)
chr2 112Mb AC104651.2 SHGC-37233*u    
NA RP11-218E17 C 2q32.2-2q32.3,6q22(FHCRC)
chr2 192Mb   AFM155YE1, AFM155YE1*u    
NA RP11-219D7 C 6q14,12q24.3(FHCRC)
chr12 128Mb   SHGC-2156    
NA RP11-222F10 C 6q14,3q23-3q24(FHCRC)
chr6 82Mb   AFM248YE9    
NA RP11-227E4 C 20p11.2,8q12,13q14-13q21.1(FHCRC)
chr7 67Mb   AFMB298XG9, AFMB298XG9*u    
NA RP11-231J1 C 3q12,1p33(FHCRC)
      SHGC-34913*u    
NA RP11-232F14 C 7q11.22,5q23.1-5q23.2(FHCRC)
chr2 78Mb   AFMB335WD9*d, AFMB335WD9*d AQ480797.1 T7 multiple_placements_on_genome
NA RP11-232F14 C 7q11.22,5q23.1-5q23.2(FHCRC)
chr7 69Mb   D7S2500, AFMB335WD9 AQ480797.1*d T7 multiple_placements_on_genome
NA RP11-247J14 C Yp11.3,Yq11.2(FHCRC)
      53784*u, DYS235*u AQ490914.1*u SP6  
NA RP11-253I17 C 2q32,8p12(FHCRC)
chr8 29Mb   SHGC-5760    
NA RP11-253O11 C 18q12.3,11p14.3(FHCRC)
chr8 43Mb   SHGC-12830    
NA RP11-254K1 CR 1p31.1,1p13,1p35,1q32-1q41(FHCRC)
chr1 114Mb   AFM240YG1, AFM240YG1*u AQ478938.1 SP6,
AQ478940.1 T7
 
NA RP11-256D1 C 20q13.3,14q11.2(FHCRC)
chr14 23Mb   SHGC-32365, SHGC-11217    
NA RP11-265F15 C 7q22,7q36.2(FHCRC)
chr1 15Mb AC009056.5 SHGC-3342*d AQ484034.1*u T7 multiple_placements_on_genome
NA RP11-265F15 C 7q22,7q36.2(FHCRC)
chr8 28Mb AC009056.5*d SHGC-3342 AQ484034.1*u T7 multiple_placements_on_genome
NA RP11-271G3 CR 9q12,1p13,1p31,3q11.2,1q31,1q32,1p34,1q24,1p36.2(FHCRC)
chr1 187Mb   AFM123YC7, AFM123YC7*u BZ749117.1 T7,
CG734266.1 T7,
CG734265.1 SP6
 
NA RP11-275F7 C Xq24,4p15.3-4p16(FHCRC)
chrX 114Mb   AFM302XC9    
NA RP11-288C18 C 2p22,2p11.1-2p11.2(FHCRC)
chr2 36Mb AC007382.3 SHGC-36905    
NA RP11-28A18 C 2q11.2,12q24.2(FHCRC)
chr12 117Mb AC068796.16 SHGC-20790 B87181.1 T7,
B87180.1*u SP6
 
NA RP11-28P6 C Yp11.3,Xp22.3(FHCRC)
chrX 1Mb   SHGC-5412 B84953.1 SP6 multiple_placements_on_genome
NA RP11-28P6 C Yp11.3,Xp22.3(FHCRC)
chrY 1Mb   SHGC-5412 B84953.1 SP6 multiple_placements_on_genome
NA RP11-2I9 C 9p21,11q22,1q32.2,12q24.2(FHCRC)
chr12 116Mb   SHGC-20788 B47791.1 T7,
B47790.1 SP6
 
NA RP11-2L10 C 12q12,3p25-3p26,1p36.2,13q33(FHCRC)
chr13 102Mb AC015789.3 SHGC-2173 AQ316625.1 SP6,
B48610.1 T7
 
NA RP11-337D5 C 2q23,2q12-2q13,2p11.2(FHCRC)
    AC013464.6*u RH11823*u, RH26323*u, SHGC-3180*u    
NA RP11-33A10 C 2q14.3,11q24(FHCRC)
chr2 126Mb   AFM319TC9 AQ046295.1  
NA RP11-34G16 C 2q11.2,2q13-2q14.1(FHCRC)
    AC008268.3*u SHGC-33780*u AQ046322.1*u  
NA RP11-351D10 C Yp11.3,Xp22.3(FHCRC)
chrX 2Mb   RH65160 AZ254462.1*u T7,
AZ254463.1*u SP6
multiple_placements_on_genome
NA RP11-351D10 C Yp11.3,Xp22.3(FHCRC)
chrY 2Mb   RH65160 AZ254462.1*u T7,
AZ254463.1*u SP6
multiple_placements_on_genome
NA RP11-352N9 C Yp11.1-Yp11.2,Xq21(FHCRC)
chrX 90Mb   DXS7616 AQ532232.1 T7  
NA RP11-38G7 C 12q24.33,12q13(FHCRC)
chr12 49Mb   SHGC-5837    
NA RP11-38M21 C 4q21,7q35(FHCRC)
chr4 78Mb   SHGC-32706    
NA RP11-397E13 C 2p11.2,2q13(FHCRC)
chr2 112Mb AC069171.2 SHGC-35119*u    
NA RP11-3A5 C 11p11.1-11p11.2,11q14.3(FHCRC)
chr11 88Mb AC021984.2*u SHGC-5997 B47879.1 T7,
B47878.1 SP6
 
NA RP11-42O5 C 9q33,9q34.3(FHCRC)
chr9 138Mb   SHGC-14712*u AQ059717.1  
NA RP11-431N15 CRS Xq12-Xq13,Xp11.2(FHCRC)
chrX 56Mb AL354793.11 RH25723 AZ254513.2 T7,
AZ254514.2 SP6
 
NA RP11-439L24 C Yp11.3,Xq21(FHCRC)
chrY 3Mb AC010737.4 DXYS2 AZ254518.2 SP6,
AZ254517.2 T7
 
NA RP11-44F14 C 16q12.1,5q13(LANL)
chr16 51Mb AC007342.6 Bda63b12 AQ200132.1  
NA RP11-44K8 C 10q21.3,9p23(FHCRC)
chr9 10Mb   SHGC-1983 AQ202484.1 ,
AQ202483.1
 
NA RP11-45H9 C 2q31,14q23(FHCRC)
chr14 54Mb   SHGC-1416    
NA RP11-463M3 CS 13q12.11-13q12.2,6p24.1-6p25.3(SC)
chr13 20Mb AL139380.6 RH44200    
NA RP11-4E17 C 9q21.1,5q35(FHCRC)
chr9 74Mb   SHGC-2479    
NA RP11-50F16 C 17q12,17q23(FHCRC)
chr17 55Mb   SHGC-34099*u AQ053427.1  
NA RP11-528K16 C 16q24,16p11.2(LANL)
chr16 28Mb AC007615.6 SHGC-58117*u    
NA RP11-55C21 C 10q11.2,10q22.2(FHCRC)
chr10 75Mb   SHGC-683 AQ081621.1 T7,
AQ081619.1
 
NA RP11-57D15 C 7q21.3,4q28(FHCRC)
chr4 141Mb   SHGC-20218 AQ115976.1  
NA RP11-57F22 C 6q16.1,12q21(FHCRC)
chr6 95Mb   AFM191XD4 AQ194861.1 ,
AQ115466.1
 
NA RP11-57L15 C 14q24,12q21(FHCRC)
chr2 28Mb   SHGC-17560*d AQ081720.1 ,
AQ116059.1*d
multiple_placements_on_genome
NA RP11-57L15 C 14q24,12q21(FHCRC)
chr12 79Mb   D12S1297 AQ116059.1 ,
AQ081720.1*d
multiple_placements_on_genome
NA RP11-58L1 C 3q13.3-3q21,8p23,9q22,3p25-3p26,10p15,11q13.4,3p12-3p13,4p16,11p15.5(FHCRC)
chr7 46Mb   SHGC-12671*d AQ200310.1 ,
AQ200308.1*d
multiple_placements_on_genome
NA RP11-58L1 C 3q13.3-3q21,8p23,9q22,3p25-3p26,10p15,11q13.4,3p12-3p13,4p16,11p15.5(FHCRC)
chr11 70Mb   SHGC-12671 AQ200308.1 ,
AQ200310.1*d
multiple_placements_on_genome
NA RP11-59O19 C 9q33,11p12(FHCRC)
chr9 123Mb   SHGC-34367    
NA RP11-5M23 C 15q14-15q15,6q12-6q13(FHCRC)
chr6 71Mb   AFM295TB3, SHGC-13045*u    
NA RP11-61B21 C 2p23-2p24,20q13.1(FHCRC)
chr2 25Mb   AFM242YD8, AFM242YD8*u    
NA RP11-61D13 C 16p11.2-16p12,16p13.1-16p13.2(FHCRC)
chr16 28Mb   SHGC-10032 AQ195198.1*u  
NA RP11-63M17 C 12p11.2-12p12.1,12q12-12q13.1(FHCRC)
chr12 48Mb   SHGC-14654 AQ201812.1 ,
AQ201810.1
 
NA RP11-65I12 CR 2q11.2,2q13(FHCRC)
chr2 113Mb AC016683.7 SHGC-20032 AQ241116.1 SP6,
AQ200816.1
 
NA RP11-66N16 C 12q22-12q23.1,1q24(FHCRC)
chr12 99Mb AC010204.19 SHGC-15767 AQ238411.1 SP6,
AQ238414.1 T7
 
NA RP11-67O5 C 7p11.2,7q11.2(FHCRC)
chr7 62Mb   SHGC-3942   multiple_placements_on_genome
NA RP11-67O5 C 7p11.2,7q11.2(FHCRC)
chr7 56Mb   SHGC-3942   multiple_placements_on_genome
NA RP11-687L3 C 6q21,6q22(FHCRC)
chr6 107Mb AC016916.4 H59915*d   multiple_placements_on_genome
NA RP11-687L3 C 6q21,6q22(FHCRC)
chrY 19Mb AC016916.4*d H59915   multiple_placements_on_genome
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
NA RP11-68E19 C 2p11.2,2q13(FHCRC)
chr2 111Mb AC017002.4 SHGC-6679 AQ236759.1 SP6,
AQ236761.1 T7
 
NA RP11-69E18 C 9p13,9q13,9q22.3(FHCRC)
chr9 33Mb   SHGC-34032 AQ237246.1 T7,
AQ237244.1 SP6
 
NA RP11-78P11 C 7q22,7q11.2(FHCRC)
chr7 71Mb   SHGC-5955   multiple_placements_on_genome
NA RP11-78P11 C 7q22,7q11.2(FHCRC)
chr7 66Mb   SHGC-5955   multiple_placements_on_genome
NA RP11-799H15 C 8p23,5q35,19p13.3,15q26,3q29,6q27,9q34.3,1p36,11p15.5(FHCRC)
chr11 7Mb AC022998.3 SHGC-30914 AQ525486.1 SP6,
AQ556277.1*u T7
 
NA RP11-79H21 C Yq11.2,Yp11.2(FHCRC)
      DYS223*u AQ284256.1*u SP6,
AQ284257.1*u T7
 
NA RP11-7E21 C 7q32.1,7p15.2(FHCRC)
chr7 30Mb   SHGC-8666    
NA RP11-81H20 C 2p22,2p11.2(FHCRC)
chr2 37Mb AC016689.4 SHGC-13870, SHGC-12924    
NA RP11-81J13 C 16q22-16q23,16p11.2,16p12,18p11.2(FHCRC)
chr18 11Mb   AFMA131WB9*u, AFMA131WB9*u, AFM297WC1*u, AFM248ZA9*u, AFM248ZA9*u AQ281688.1 SP6,
AQ281691.1 T7
 
NA RP11-82L3 C 15p11.1-15p11.2,14p11.1-14p11.2,13p11.1-13p11.2,22p11.1-22p11.2,21p11.1-21p11.2,20q11.2(FHCRC)
chrY 10Mb   DYS269    
NA RP11-84J4 C 5p15.2,12p11.22,2q34(FHCRC)
chr12 28Mb   SHGC-12814    
NA RP11-84N24 C 2p11.1-2q11.1,9p12-9p13,9q12-9q13,14q12(FHCRC)
chr14 27Mb   SHGC-35139    
NA RP11-86E13 C 17q24,4q21,12q14(FHCRC)
chr4 77Mb   SHGC-12003 AQ283051.1 T7,
AQ283049.1 SP6
 
NA RP11-86F24 CS 1p21,13q12-13q13.3(SC)
chr1 100Mb AC093428.2 H07071    
NA RP11-8I12 C 20q11.2,12p13,22q13.3(FHCRC)
chr20 30Mb   SHGC-3221*d B72352.1 T7 multiple_placements_on_genome
NA RP11-8I12 C 20q11.2,12p13,22q13.3(FHCRC)
chr12 7Mb   SHGC-3221 B72352.1*d T7 multiple_placements_on_genome
NA RP11-91A10 C 21p11.1-21q11.1,13p11.1-13q11,14p11.1-14q11.1(FHCRC)
chr14 20Mb   SHGC-10347 AQ283485.1 T7,
AQ283482.1 SP6
 
NA RP11-91A12 C 19q13.2,11q13,2p16,21cen,13cen,14cen(FHCRC)
chr19 50Mb   AFM016YC5*u, AFM016YC5*u AQ283497.1 T7,
AQ283487.1 SP6
 
NA RP11-91M20 C 16p13.3,5p15.3,2q22-2q23,8p23,3q13.3-3q21,3p25-3p26,12p13,2p12-2p13,11p15,3p12-3p13,10q26,11q12-11q13,4p16,7p22(FHCRC)
      SHGC-11992*u AQ282740.1*u SP6,
AQ282743.1*u T7
 
NA RP11-94N6 C 14q24.2,7q21.3(FHCRC)
chr7 95Mb   SHGC-35735 AQ311890.1 SP6,
AQ311891.1 T7
 
NA RP11-95A21 C 1p21,5q14(FHCRC)
chr5 85Mb AC091994.1 SHGC-36370*u AQ312081.1 T7,
AQ312079.1 SP6
 
NA RP11-95J1 C 4q28,4q12(FHCRC)
chr4 142Mb AC097475.2 SHGC4-1584 AQ314902.1 SP6,
AQ314907.1 T7
 
NA RP11-96D2 C 16p13.3,8p23.2,3p12,12p13.2,3q21,11q13,11p15.4,4p16.2(FHCRC)
chr16 5Mb   SHGC-14817 AQ314835.1 SP6,
AQ314837.1 T7
 
NA RP11-98M19 C 4q25-4q26,6p23(FHCRC)
chr6 14Mb   AFM035WC1, AFM035WC1*u AQ316768.1 T7,
AQ316765.1 SP6
 
NA RP11-9B4 C 7q32.1,7p14-7p15.1(FHCRC)
chr7 126Mb   AFMA125WH1, AFMA125WH1*u    
NA RP11-9G4 C 17q22,17p13.1(FHCRC)
chr17 50Mb   SHGC-11266 B71558.1 SP6,
B71559.1 T7
 
NA CTB-55N19 1p13.1, 1p31.2(CSMC)
chr1 118Mb   AFMA055YF1    
NA CTA-611E3 7q11.21, 7q11.23, 7q22(CSMC)
chr7 75Mb   D7S2323    
NA CTA-190C6 11q13.1, 11q13.5(CSMC)
chr11 69Mb   D11S4381, WI-4232    
NA CTB-54I9 5p13.3, 20q13.1(secondary)(CSMC)
chr5 31Mb   D5S477    
total113C:101 R:10 S:3113105 2911361 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.