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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
X RP11-294K6 C Xp22.3(FHCRC)
 chrX 6Mb   DXS7517 AQ508405.1 SP6,
AZ254432.1*u T7,
AZ254433.1*u SP6,
AQ508407.1*u T7		  
X RP11-347D3 C Xp22.3(FHCRC)
 chrX 8Mb     AQ540996.1 SP6,
AQ540999.1 T7		  
X RP11-383I22 CR Xp22.3(FHCRC)
Xp22.31d~22.31e(NCI)
 chrX 9Mb   DXS1375 CL423317.1 T7,
CL423315.1 SP6,
AQ533276.1 SP6		  
X RP11-483M24 C Xp22.3(FHCRC)
 chrX 6Mb AC073583.19 RH38708 AZ254650.2 T7,
AQ628840.1 SP6,
AZ254651.2 SP6		  
X RP11-930D21 C Xp22.2~22.3(FHCRC)
 chrX 9Mb     AQ599732.1 T7,
AQ756474.1 SP6		  
X RP11-366M24 R Xp22.32b(NCI)
 chrX 5Mb AC078956.19 DXS1118E AZ303248.2 SP6,
AZ303247.2 T7		  
X RP11-143E20 C Xp22.2(FHCRC)
 chrX 7Mb AC074034.19,
AC148216.1		 SHGC-6734 AQ389732.1 SP6,
AQ389735.1 T7		  
X RP11-2K15 C Xp22.2(FHCRC)
 chrX 16Mb AL732371.4 SHGC-33363*u B48592.1 SP6,
B48593.1 T7		  
X RP11-308F2 R Xp22.2(NCI)
 chrX 14Mb   DXS7951 CL423280.1 SP6,
CL423284.1 T7		  
X RP11-359C4 C Xp22.2(FHCRC)
 chrX 15Mb AC095351.5   AQ539235.1 T7,
AQ539234.1 SP6		  
X RP11-382D24 R Xp22.2(NCI)
 chrX 12Mb   DXS7730 AZ254489.2 T7,
AZ254490.2 SP6		  
X RP11-449M18 C Xp22.2(FHCRC)
 chrX 15Mb AC096510.11 DXS7723 AZ254519.2 T7,
AQ584100.1 T7,
AZ254520.2 SP6,
AQ584097.1*u SP6		  
X RP11-451G24 C Xp22.2(FHCRC)
 chrX 9Mb     AQ583940.1 SP6,
AQ583942.1 T7		  
X RP11-657D19 C Xp22.2(FHCRC)
 chrX 8Mb AC079142.15   AQ609552.1 T7,
AQ514549.1*u SP6		  
X RP11-80N6 C Xp22.2(FHCRC)
 chrX 17Mb     AQ284183.1 T7,
AQ317824.1 SP6		  
X RP11-89B5 C Xp22.2(FHCRC)
 chrX 10Mb     AQ283622.1 SP6,
AQ283624.1 T7		  
X RP11-90F9 C Xp22.2(FHCRC)
 chrX 13Mb     AQ283667.1 SP6  
X RP11-91I18 C Xp22.2(FHCRC)
 chrX 19Mb     AQ282583.1 T7,
AQ282581.1 SP6		  
X RP11-18M9 C Xp22.1~22.2(FHCRC)
 chrX 14Mb AC023964.2,
AC097260.4		   B85515.1 T7,
B85514.1 SP6		  
X RP11-507P24 CR Xp22.1~22.2(FHCRC)
Xp22.12a~22.12b(NCI)
 chrX 20Mb   DXS7786 AZ303290.2 T7,
AZ515683.1*u SP6		  
X RP11-568P9 R Xp22.13d~22.13e(NCI)
 chrX 17Mb   DXS7793 AZ254682.2 T7,
AZ303377.2 SP6		  
X CTD-2033A1 C Xp22.1(FHCRC)
 chrX 22Mb     B74193.1 T7,
B74192.1 SP6,
AQ230542.1*u SP6,
AQ306678.1*u T7		  
X RP11-124B4 C Xp22.1(FHCRC)
 chrX 14Mb   SHGC-194*u AQ344260.1 T7,
AQ344256.1 SP6		  
X RP11-48D14 C Xp22.1(FHCRC)
 chrX 20Mb AL732596.2 AFM337WD5, AFM337WD5*u AQ200610.1 ,
AQ200606.1 		 
X RP11-79B3 C Xp22.1(FHCRC)
 chrX 24Mb     AQ283360.1 T7,
AQ283358.1 SP6		  
X RP11-482C1 CR Xp21~22.1(FHCRC)
Xp22.12b(NCI)
 chrX 19Mb   DXS8264*u AZ303227.2 T7,
AQ629987.1 T7,
AQ629984.1 SP6,
AZ303228.2 SP6		  
X RP11-497C10 CR Xp21~22.1(FHCRC)
Xp22.12a(NCI)
 chrX 21Mb   DXS7480 AZ254653.2 SP6,
AZ254652.2 T7		  
X RP11-26L4 R Xp21.3d(NCI)
 chrX 26Mb AC022356.2   B84600.1 T7,
B84599.1 SP6		  
X RP11-274K8 C Xp21.3(FHCRC)
 chrX 27Mb     AQ480812.1 T7  
X CTD-2188E4 R Xp21(UCSF)
 chrX 30Mb     AQ116778.1 T7,
AQ086711.1*u SP6		  
X CTD-2193N9 C Xp21(FHCRC)
Xp21(UCSF)
         AQ170912.1*u SP6  
X RP11-124H12 C Xp21(FHCRC)
 chrX 31Mb   AFM217XA5 AQ345143.1 SP6,
AQ345146.1 T7		  
X RP11-338L12 CR Xp21(FHCRC)
 chrX 31Mb   RH26866 AZ254454.1*u T7,
AZ254455.1*u SP6		  
X RP11-357F9 C Xp21(FHCRC)
 chrX 32Mb   DXS7029E AQ539311.1 SP6,
AQ539313.1 T7,
AZ254467.1*u T7,
AZ254468.1*u SP6		  
X RP11-377J16 C Xp21(FHCRC)
 chrX 31Mb   DXS7630 AZ254471.1*u T7,
AZ254472.1*u SP6		  
X RP11-480I16 C Xp21(FHCRC)
 chrX 30Mb   DXS1096 AZ303303.2 T7,
AZ303287.2 SP6		  
X RP11-487M22 CR Xp21(FHCRC)
Xp21.3b(NCI)
 chrX 28Mb   DXS7926 AZ301104.2 T7,
AQ631865.1 T7,
AZ301105.2 SP6		  
X RP11-509C1 CR Xp21(FHCRC)
Xp21.1e~21.2a(NCI)
 chrX 31Mb   DXS7826 AZ303291.2 T7,
AZ303292.2 SP6		  
X RP11-662D2 C Xp21(FHCRC)
 chrX 30Mb     AQ442572.1 T7,
AQ518758.1 SP6		  
X RP11-89L23 C Xp21(FHCRC)
 chrX 30Mb     AQ318510.1 SP6,
AZ517812.1 T7,
AQ318511.1 T7		  
X CTD-2188N19 C Xp11.4(FHCRC)
Xp21(UCSF)
 chrX 31Mb     AQ117659.1 T7,
AQ294003.1 SP6		  
X RP11-429N5 CR Xp11.4~21(FHCRC)
Xp11.4d~11.4e(NCI)
 chrX 39Mb   SWXD3103 AZ254511.2 T7,
AQ551510.1 T7,
AQ551497.1 SP6,
AZ254512.2 SP6		  
X RP11-495K15 CR Xp11.4~21(FHCRC)
Xp21.1a(NCI)
 chrX 37Mb   RH35775 AZ303207.2 T7,
AZ303208.2 SP6		  
X RP11-70D7 C Xp11.4~21(FHCRC)
 chrX 34Mb   SHGC-6614 AQ236808.1 SP6  
X RP11-46A23 CR Xp21.2(FHCRC)
Xp21.2(NCI)
 chrX 31Mb   SHGC-1505 AQ198399.1 ,
AQ198403.1 		 
X RP11-357K9 S Xp11.4~21.2(SC)
 chrX 37Mb AL356858.19   AQ538675.1 T7  
X RP11-69O16 S Xp11.4~21.2(SC)
 chrX 35Mb AL359734.13   AQ238178.1 SP6  
X CTD-2002E24 C Xp21.1(FHCRC)
 chrX 37Mb     AQ769956.1 T7,
AQ770122.1 SP6		  
X RP11-122N14 C Xp21.1(FHCRC)
 chrX 31Mb AC079175.24 SHGC-8333 AZ520209.1 T7,
AQ345063.1 SP6		  
X RP11-120F17 S Xp11.3~21.1(SC)
 chrX 38Mb   stSG74605 AQ351135.1 T7,
AQ351131.1*u SP6		  
X RP11-252K10 S Xp11.3~21.1(SC)
 chrX 42Mb AL590074.3 SHGC-18105 AZ517450.1 SP6,
AQ491831.1 T7		  
X RP11-36B23 S Xp11.3~21.1(SC)
 chrX 42Mb AL136166.6   AQ047025.1 SP6  
X RP11-506C6 CR Xp11.4(FHCRC)
Xp11.4e(NCI)
 chrX 38Mb   DXS7611 AZ303203.2 T7,
AZ303204.2 SP6		  
X RP11-91I16 C Xp11.4(FHCRC)
 chrX 39Mb     AQ282577.1 SP6,
AQ282579.1 T7		  
X RP11-12J5 C Xp11.3~11.4(FHCRC)
 chrX 37Mb AC013778.4*u   B75014.1 T7,
B75013.1 SP6		  
X RP11-299D7 CR Xp11.3~11.4(FHCRC)
Xp11.4a(NCI)
 chrX 40Mb   RH38747 AQ504705.1 SP6,
AZ254436.1*u T7,
AZ254437.1*u SP6		  
X RP11-75A9 S Xp11.23~11.4(SC)
 chrX 46Mb AL139811.30   AQ268907.1 SP6  
X CTD-2107N14 C Xp11(UCSF)
Xp11.22(FHCRC)
 chrX 49Mb     AQ566838.1 T7,
AQ572072.1 SP6		  
X RP11-24P8 C Xp11.3(FHCRC)
 chrX 42Mb AC023994.2 SHGC-18105 AQ013935.1 ,
B84503.1 SP6		  
X RP11-512H22 C Xp11.3(FHCRC)
 chrX 42Mb   DXS6722 AZ254656.2 T7  
X RP11-517F20 C Xp11.3(FHCRC)
 chrX 47Mb   DXS1338 AZ301107.2 SP6,
AZ301106.2 T7		  
X RP11-531L8 CR Xp11.3(FHCRC)
Xp11.3a(NCI)
 chrX 44Mb   RH16599 AZ303205.2 T7,
AZ303206.2 SP6		  
X RP11-8G18 C Xp11.3(FHCRC)
 chrX 46Mb   SHGC-1313 B72330.1 SP6  
X RP11-466C12 CR Xp11.23f(NCI)
Xp11.3(FHCRC)
 chrX 47Mb   DXS7629 AZ254479.3 T7,
AQ635914.1 SP6,
AZ254480.2 SP6		  
X RP11-56H2 S Xp11.22~11.3(SC)
 chrX 51Mb AL390060.14 A005Q38, A005Q38*u AQ082008.1  
X RP11-17K17 CS Xp11.1~11.2(FHCRC)
Xp11.1~11.3(SC)
 chrX 51Mb AC027066.3 SHGC-24010 B82753.1 T7,
B82752.1 SP6		  
X RP11-384A17 R Xp11.3b(NCI)
 chrX 43Mb   RH63518*u AZ254494.2 SP6,
AQ533314.1 T7,
AZ254493.2 T7		  
X RP11-104D21 S Xp11.21~11.23(SC)
 chrX 50Mb AL441923.9 H67553 AQ313289.1 T7  
X RP11-107C19 C Xp11.2(FHCRC)
 chrX 48Mb   SHGC-11027, SHGC-31984 AQ318992.1 SP6,
AQ318994.1 T7		  
X RP11-119E20 S Xp11.21~11.23(SC)
 chrX 50Mb AL121865.7   AQ350376.1 T7,
AQ350374.1 SP6		  
X RP11-126A13 C Xp11.2(FHCRC)
 chrX 55Mb   AFM151XF6, AFM151XF6*u AQ345109.1 SP6,
AQ345112.1 T7		  
X RP11-22B10 CR Xp11.2(FHCRC)
Xp11.22a(NCI)
 chrX 51Mb AL929101.4   AQ009390.1 T7,
B92169.1 SP6,
B86117.1 SP6		  
X RP11-258C19 S Xp11.21~11.23(SC)
 chrX 53Mb AL139396.18   AQ482926.1 SP6,
AQ482929.1 T7		  
X RP11-292J24 CR Xp11.2(FHCRC)
Xp11.21a(NCI)
 chrX 54Mb   DXS7159E AZ301091.2 T7,
CL423347.1 T7,
CL423344.1 SP6		  
X RP11-528A24 CR Xp11.2(FHCRC)
Xp11.22c~11.23a(NCI)
 chrX 48Mb   DXS1331*u AZ301109.2 SP6,
AZ301108.2 T7		  
X RP11-58H17 S Xp11.21~11.23(SC)
 chrX 49Mb   sts-AA032156 AQ200240.1 ,
AQ200238.1 		 
X RP11-93M8 S Xp11.22~11.2(SC)
 chrX 57Mb AL354703.15   AQ323636.1 SP6  
X RP11-167P23 S Xcen~Xp11.22(SC)
 chrX 55Mb AL159987.19   AQ421202.1 SP6  
X RP11-266I3 S Xcen~Xp11.22(SC)
 chrX 55Mb AL590240.5 WI-21209 AQ488926.1 SP6,
AQ488929.1 T7		  
X RP11-353K22 S Xcen~Xp11.22(SC)
 chrX 54Mb AL391139.19 WI-19377 AQ533597.1 SP6,
AQ533599.1 T7		  
X RP11-431N15 CRS Xp11.1~11.22(SC)
Xp11.1a(NCI)
 chrX 56Mb AL354793.11 RH25723 AZ254513.2 T7,
AZ254514.2 SP6		  
X RP11-465B24 S Xp11.1~11.22(SC)
 chrX 56Mb AL356058.39 RH25723 AQ581842.1 SP6,
AQ581843.1 T7		  
X RP11-637B23 S Xcen~Xp11.22(SC)
 chrX 50Mb AL359914.14   AQ430489.1 SP6,
AQ403264.1*u T7		  
X RP11-90I7 CS Xcen~Xq12(SC)
Xp11.1(FHCRC)
 chrX 64Mb AL355606.14   AQ281664.1 T7,
AZ517920.1 T7,
AQ281661.1 SP6		  
X RP11-90N17 C Xq11(FHCRC)
 chrX 62Mb AL596126.2   AQ284555.1 T7,
AZ518633.1 T7,
AQ284554.1 SP6		  
X RP11-133K18 S Xcen~Xq12(SC)
 chrX 65Mb AC141263.1,
AL353136.21		   AZ516005.1 T7,
AQ384910.1 SP6		  
X RP11-144M17 S Xcen~Xq12(SC)
 chrX 62Mb AL359854.8   AQ388013.1 T7  
X RP11-151A2 S Xcen~Xq12(SC)
 chrX 62Mb AL451106.9   AQ377441.1 T7,
AQ377140.1 SP6		  
X RP11-22D19 S Xq11.1~12(SC)
 chrX 63Mb AL591765.13 stFSX1812 AQ008947.1 T7  
X RP11-383C12 S Xq11.1~13.1(SC)
 chrX 66Mb AL356358.19   AQ533218.1 T7  
X RP11-446J16 S Xq11.1~13.3(SC)
         AQ586980.1*u SP6  
X RP11-479J1 CS Xq11.1~13.3(SC)
Xq13(FHCRC)
 chrX 66Mb AL158016.15 DXS1397 AZ303302.2 SP6,
AZ303301.2 T7		  
X RP11-434B14 CR Xq11.1b(NCI)
Xq12(FHCRC)
 chrX 64Mb   DXS7086 AZ254515.2 T7,
AQ552291.1 T7,
AQ552290.1 SP6,
AZ254516.2 SP6		 multiple_placements_on_genome
X RP11-434B14 CR Xq11.1b(NCI)
Xq12(FHCRC)
 chrY 57Mb   DXS7086*d AQ552290.1 SP6,
AZ254516.2 SP6,
AZ254515.2*d T7,
AQ552291.1*d T7		 multiple_placements_on_genome
X RP11-51L20 C Xq11.2~12(FHCRC)
 chrX 71Mb   RP_S4X AZ518288.1 T7,
AQ053721.1 		 
X RP11-147G1 C Xq12(FHCRC)
 chrX 64Mb   SHGC-32201 AQ376372.1 T7  
X RP11-90P17 C Xq12(FHCRC)
 chrX 66Mb   SHGC-9393*u AZ518679.1 T7,
AQ285259.1 T7,
AQ285256.1 SP6		  
X RP11-93B10 S Xq12~13.1(SC)
 chrX 62Mb AL158203.12   AQ312026.1*d SP6,
AQ312028.1*d T7		 multiple_placements_on_genome
X RP11-93B10 S Xq12~13.1(SC)
 chr18 19Mb AL158203.12*d   AQ312028.1 T7,
AQ312026.1 SP6		 multiple_placements_on_genome
X RP11-204D21 C Xq12~13(FHCRC)
 chrX 68Mb   AFM287ZG1 AQ417669.1 T7,
AQ417666.1 SP6		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
X RP11-419G1 CR Xq12a(NCI)
Xq13(FHCRC)
 chrX 67Mb   DXS7838 AZ254505.2 T7,
AZ254506.2 SP6		  
X RP11-145B3 S Xq13.1~13.3(SC)
 chrX 74Mb AL360179.8   AQ373842.1 SP6,
AQ373844.1 T7		  
X RP11-177A4 C Xq13(FHCRC)
 chrX 69Mb   SHGC-4660 AQ415505.1 SP6,
AQ415506.1 T7		  
X RP11-372C14 S Xq13.1~13.3(SC)
 chrX 72Mb     AQ528875.1 T7,
AQ632164.1*d SP6		 multiple_placements_on_genome
X RP11-372C14 S Xq13.1~13.3(SC)
 chrX 55Mb     AQ632164.1 SP6,
AQ528875.1*d T7		 multiple_placements_on_genome
X RP11-451A4 C Xq13(FHCRC)
 chrX 68Mb     AQ583009.1 SP6,
AQ583012.1 T7		  
X RP11-79C1 C Xq13(FHCRC)
 chrX 74Mb     AQ282217.1 T7,
AZ520681.1 SP6,
AQ282215.1 SP6		  
X RP11-79C13 C Xq13(FHCRC)
 chrX 73Mb     AQ282257.1 SP6,
AQ316894.1 SP6,
AZ520691.1 SP6,
AQ282259.1 T7		  
X RP11-136A22 S Xq13.1~21.1(SC)
 chrX 71Mb   stSG30461*u AQ382910.1 SP6  
X RP11-451F6 CR Xq13.2a(NCI)
Xq13~21(FHCRC)
 chrX 73Mb   DXS1103E AZ254477.2 T7,
AZ254478.2 SP6,
AQ586104.1*u SP6		  
X RP11-566L6 C Xq13~21(FHCRC)
 chr8 69Mb   DXS7722*d AZ254679.2 SP6,
AZ254678.2 T7		 multiple_placements_on_genome
X RP11-566L6 C Xq13~21(FHCRC)
 chrX 73Mb   DXS7722 AZ254678.2*d T7,
AZ254679.2*d SP6		 multiple_placements_on_genome
X RP11-402P6 R Xq13.1d(NCI)
 chrX 70Mb BX276092.9 DXS1517*u AZ254497.2 T7,
AZ254498.2 SP6		  
X RP11-436L1 R Xq13.1e(NCI)
 chrX 71Mb   DXS1377 AZ254646.2 SP6,
AZ254645.2 T7		  
X RP11-451A22 C Xq13.2(FHCRC)
 chrX 77Mb     AQ583061.1 T7  
X RP11-142K4 S Xq13.2~21.1(SC)
 chrX 76Mb AL356235.22   AQ385391.1 SP6,
AQ385395.1 T7		 multiple_placements_on_genome
X RP11-142K4 S Xq13.2~21.1(SC)
 chrX 0Mb AL356235.22*d   AQ385391.1 SP6,
AQ385395.1 T7		 multiple_placements_on_genome
X RP11-518C21 CS Xq13.2~21.1(SC)
Xq21.1(FHCRC)
 chrX 78Mb AL157825.12 DXS1420 AZ254662.2 SP6,
AZ254661.2 T7		  
X RP11-159L8 S Xq13.2~21.2(SC)
 chrX 78Mb AL590222.4 stbA159L8SP6 AQ374012.1 T7,
AQ374010.1 SP6		  
X RP11-91G23 C Xq13.3(FHCRC)
 chrX 79Mb     AQ281421.1 T7,
AQ281414.1 SP6		  
X RP11-102P23 S Xq13.3~21.1(SC)
 chrX 80Mb AL357115.24   AQ314643.1 SP6,
AQ314646.1 T7		  
X RP11-42M11 S Xq13.3~21.2(SC)
 chrX 0Mb AL121874.12*d   AQ058900.1 ,
AQ052797.1 		multiple_placements_on_genome
X RP11-42M11 S Xq13.3~21.2(SC)
 chrX 76Mb AL121874.12   AQ058900.1 ,
AQ052797.1 		multiple_placements_on_genome
X RP11-477B2 R Xq13.3b(NCI)
 chrX 75Mb   DXS1383 AZ254486.2 SP6,
AQ636732.1 SP6,
AZ254485.2 T7,
AQ636735.1 T7		  
X RP11-297K23 R Xq21.1a~21.1b(NCI)
 chrX 78Mb   DXS6954 AZ254434.1*u T7,
AZ254435.1*u SP6		  
X RP11-246G22 C Xq21.1(FHCRC)
 chrX 82Mb   AFM207ZG5, AFM207ZG5*u AQ478262.1 T7,
AQ478259.1 SP6		  
X RP11-353A12 C Xq21.1(FHCRC)
 chrX 78Mb   DXS6954 AQ532998.1 T7  
X RP11-91J20 C Xq21.1(FHCRC)
 chrX 74Mb   SHGC-36950 AQ285278.1 SP6,
AQ285281.1 T7		  
X RP11-346E8 S Xq21.1~21.31(SC)
 chrX 80Mb AL359885.19   AQ541871.1 SP6,
AQ541874.1 T7		  
X RP11-54F22 RS Xq21.1~21.31(SC)
Xq21.1d(NCI)
 chrX 83Mb AL389887.7 DXS7135 AQ082140.1 ,
AQ082142.1 T7		  
X RP11-479E16 S Xq21.1~21.32(SC)
 chrX 57Mb AL606754.6 DXS8275 AQ628671.1 T7,
AQ628668.1 SP6		  
X RP11-336F4 CR Xq21(FHCRC)
 chrX 83Mb   DXS1519 AZ254450.1*u T7,
AZ254451.1*u SP6		  
X RP11-349D15 C Xq21(FHCRC)
 chrX 94Mb AL591342.1 DXS1398 AQ527497.1 T7,
AQ527465.1 SP6		  
X RP11-567N15 CR Xq21(FHCRC)
Xq21.31b(NCI)
 chrX 87Mb   DXS7695 AZ254681.2 SP6,
AZ254680.2 T7		  
X RP11-88N12 C Xq21(FHCRC)
 chrX 88Mb     AZ516876.1 T7,
AQ281562.1 T7,
AQ281559.1 SP6		  
X RP11-506F15 C Xq21~22(FHCRC)
 chrX 99Mb   DXS1323*u AZ303219.2 T7,
AZ303220.2 SP6		  
X RP11-77H4 C Xq21~22(FHCRC)
 chrX 100Mb     AQ285397.1 SP6,
AQ285399.1*d T7		 multiple_placements_on_genome
X RP11-77H4 C Xq21~22(FHCRC)
 chrX 30Mb     AQ285399.1 T7,
AQ285397.1*d SP6		 multiple_placements_on_genome
X RP11-156J23 S Xq21.2~21.33(SC)
 chrX 92Mb AL158053.14   AQ389188.1 SP6  
X RP11-346P11 S Xq21.2~21.33(SC)
 chrX 86Mb AL121822.8   AQ531638.1 SP6,
AQ531641.1 T7		  
X RP11-361B11 S Xq21.2~22.1(SC)
 chrX 92Mb AL359964.9   AQ542056.1 SP6,
AQ542057.1*u T7		  
X RP11-465C5 S Xq21.2~22.1(SC)
 chrX 93Mb AL357354.10   AQ636378.1 T7  
X RP11-485F13 S Xq21.2~22.2(SC)
 chrX 97Mb AL157778.9   AQ633775.1 SP6  
X RP11-379J18 CR Xq21.3(FHCRC)
Xq21.33c~21.33d(NCI)
 chrX 97Mb   DXS1465 AQ533759.1 T7,
AQ533757.1 SP6,
AZ254473.1*u T7,
AZ254474.1*u SP6		  
X RP11-77D22 C Xq21.3(FHCRC)
 chrX 92Mb   AFM136YC7, AFM136YC7*u AQ285337.1 SP6  
X RP11-88F12 C Xq21.3(FHCRC)
 chrX 92Mb     AZ516191.1 T7,
AQ286714.1 T7,
AZ516188.1 SP6,
AQ286712.1 SP6		  
X RP11-89G18 C Xq21.3(FHCRC)
 chrX 99Mb     AQ282848.1 T7,
AQ282846.1 SP6		  
X RP11-91K14 C Xq21.3(FHCRC)
 chrX 98Mb     AQ282641.1 SP6,
AQ282643.1 T7		  
X RP11-114A21 S Xq21.31~22.1(SC)
 chrX 93Mb AL357129.11   AQ343933.1 T7,
AQ343931.1 SP6		  
X RP11-151N12 S Xq21.31~22.1(SC)
 chrX 98Mb AL109835.13   AQ379675.1 T7  
X RP11-449F11 S Xq21.31~22.1(SC)
 chrX 96Mb AL446026.5 stFSX1284 AQ585017.1 T7,
AQ584388.1*u SP6		  
X RP11-75F12 S Xq21.31~22.2(SC)
 chrX 97Mb AL360173.15   AQ266649.1 T7,
AQ266647.1 SP6		  
X RP11-467H14 CR Xq21.3~22(FHCRC)
Xq22.1b~22.1c(NCI)
 chrX 101Mb   sWXD3584 AZ254649.2 SP6,
AQ630970.1 SP6,
AZ254648.2 T7,
AQ630973.1 T7		  
X RP11-483J19 R Xq21.32a(NCI)
 chrX 92Mb   DXS7552 AZ303289.2 SP6,
AQ629407.1 SP6,
AQ629410.1 T7,
AZ303288.2 T7		  
X RP11-358K18 S Xq21.32~22.1(SC)
 chrX 94Mb AL157380.15   AQ541607.1 T7  
X RP11-35G18 S Xq21.32~22.2(SC)
 chrX 96Mb AL356484.10   AQ047095.1  
X RP11-99E24 S Xq21.32~22.3(SC)
 chrX 99Mb AL355593.21   AQ323278.1 SP6  
X RP11-163C23 S Xq21.33~22.3(SC)
 chrX 103Mb   stdJ324P21SP6 AQ377738.1 SP6,
AQ377739.1 T7		  
X RP11-274M8 S Xq21.33~22.3(SC)
 chrX 96Mb AL139809.16   AQ480831.1 T7  
X RP11-115M20 S Xq21.33~23(SC)
 chrX 97Mb AL365191.4   AQ345708.1 SP6,
AQ345710.1 T7		  
X RP11-40K1 S Xq21.33~23(SC)
 chrX 103Mb AL442225.1,
AL442226.1		 stSG81882 AQ030128.1 ,
AZ517480.1*u T7		  
X RP11-335H4 R Xq21.33b~21.33c(NCI)
 chrX 94Mb   DXS1398 AZ254448.1*u T7,
AZ254449.1*u SP6		  
X RP11-508G21 CR Xq21.33d~22.1a(NCI)
Xq22~23(FHCRC)
 chrX 99Mb   DXS7735 AZ303375.2 SP6,
AZ515684.2 T7		  
X CTD-2006G2 C Xq22(FHCRC)
 chrX 100Mb     B52678.1 ,
AQ770042.1 T7,
B52679.1 SP6,
AQ775776.1 SP6		  
X CTD-2245M4 R Xq22(UCSF)
 chrX 103Mb     AQ066258.1 SP6,
AQ293661.1*u T7		  
X RP11-230E14 S Xq22.1~22.3(SC)
 chrX 103Mb AL136977.8   AQ490379.1 SP6  
X RP11-452M1 CR Xq22(FHCRC)
Xq22.2b~22.3a(NCI)
 chrX 106Mb   DXS1456 AZ301089.2 SP6,
AZ254647.2 T7		  
X RP11-79J11 C Xq22(FHCRC)
 chrX 104Mb     AQ284285.1 SP6,
AQ284286.1 T7		  
X RP11-155N17 S Xq22.1~23(SC)
 chrX 105Mb AL133271.22   AQ372105.1 T7,
AQ372103.1 SP6		  
X RP11-393D6 C Xq22~23(FHCRC)
 chrX 104Mb   RH63347 AZ254496.2 SP6,
AZ254495.2 T7		  
X RP11-453F21 C Xq22~23(FHCRC)
 chrX 106Mb   DXS7891 AQ586069.1 SP6  
X RP11-4P13 S Xq22.1~23(SC)
 chrX 107Mb AL137065.10   B49161.1 SP6  
X RP11-572H24 R Xq22.2a(NCI)
 chrX 103Mb   DXS1460 AZ254683.2 T7,
AZ254684.2 SP6		  
X RP11-14G9 S Xq22.3~24(SC)
 chrX 110Mb AL356578.22   B75235.1 SP6,
B75236.1 T7		  
X RP11-484G12 S Xq22.3~24(SC)
 chrX 113Mb   stSG44004 AQ630572.1 T7,
AQ630570.1 SP6		  
X RP11-513O15 CR Xq22.3c(NCI)
Xq23(FHCRC)
 chrX 110Mb   DXS7357 AZ254657.2 T7,
AZ254658.2 SP6		  
X CTD-2236H16 R Xq23(UCSF)
         AQ340484.1*u SP6,
AQ369820.1*u T7		  
X RP11-110J14 C Xq23(FHCRC)
 chrX 114Mb     AQ320111.1 SP6  
X RP11-485M23 S Xq23(SC)
 chrX 111Mb AL137124.13   AQ632697.1 SP6  
X RP11-491C15 CR Xq23(FHCRC)
Xq23d~23e(NCI)
 chrX 116Mb   DXS7319 AZ303300.2 SP6,
AZ303299.2 T7		  
X RP11-528G12 CR Xq23(FHCRC)
Xq23c(NCI)
 chrX 114Mb   DXS8297*u AZ303229.2 T7,
AZ303230.2 SP6		  
X RP11-79N19 C Xq23(FHCRC)
 chrX 110Mb   SHGC-9199 AQ285093.1 SP6,
AQ285111.1 T7		  
X RP11-80F14 C Xq23(FHCRC)
 chrX 111Mb     AQ284012.1 SP6,
AZ521454.1 T7,
AQ284014.1 T7		  
X RP11-80K1 C Xq23(FHCRC)
 chrX 105Mb   SHGC-33056 AZ520749.1 T7,
AQ281249.1 SP6		  
X RP11-89N19 C Xq23(FHCRC)
 chrX 116Mb     AQ284924.1 T7,
AQ284921.1 SP6		  
X RP11-561J7 CR Xq23(FHCRC)
Xq24c(NCI)
 chrX 117Mb   DXS7274 AZ254675.2 SP6,
AZ254674.2 T7		  
X RP11-138G10 S Xq23~24(SC)
 chrX 113Mb   stSG44004 AQ383790.1 T7,
AQ383787.1 SP6		  
X RP11-331F17 CR Xq23~24(FHCRC)
Xq23e~24a(NCI)
 chrX 116Mb   DXS7918 AZ254446.1*u T7,
AZ254447.1*u SP6		  
X CTD-2336B22 S Xq23~25(SC)
 chrX 117Mb     AQ041936.1 SP6,
AQ041934.1 		 
X RP11-65B15 S Xq23~25(SC)
 chrX 116Mb   stbA304N7SP6*u AQ241224.1 SP6,
AQ202927.1 		 
X RP11-79A6 C Xq24(FHCRC)
 chrX 119Mb     AQ282365.1 SP6,
AQ580439.1 SP6,
AQ282368.1 T7,
AQ580443.1*u T7		  
X RP11-423F7 CR Xq24~25(FHCRC)
Xq24e~25a(NCI)
 chrX 119Mb   stSG2986 AZ254507.2 T7,
AZ254508.2 SP6,
AQ549465.1 SP6		  
X RP11-63E7 C Xq24~25(FHCRC)
 chrX 122Mb   AFM280VF5 AQ196250.1 ,
AQ196247.1 		 
X RP11-324A3 S Xq24~26.2(SC)
 chrX 130Mb AL355366.9   AQ538877.1*u T7  
X RP11-531P11 R Xq25a(NCI)
 chrX 120Mb   DXS7316 AZ254665.2 T7,
AZ254666.2 SP6		  
X RP11-526E6 R Xq25a~25b(NCI)
 chrX 122Mb   DXS7322 AZ254663.2 T7,
AZ254664.2 SP6		  
X CTD-2015J18 C Xq25(FHCRC)
 chrX 128Mb     B60679.1 SP6,
B66827.1 ,
AQ235734.1*u T7		  
X RP11-22C20 C Xq25(FHCRC)
 chrX 120Mb   SHGC-194*u AQ009028.1 SP6,
B86146.1 SP6,
B86147.1 T7		  
X RP11-325K14 CR Xq25(FHCRC)
Xq25c(NCI)
 chrX 122Mb   DXS7906 AQ536948.1 T7,
AZ254440.1*u T7,
AZ254441.1*u SP6		  
X RP11-79C15 C Xq25(FHCRC)
 chrX 125Mb     AQ282265.1 T7,
AZ520693.1 SP6,
AQ282262.1 SP6		  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
X RP11-89N20 Xq25(FHCRC)
 chrX 130Mb     AQ286679.1 T7,
AQ286676.1*u SP6		  
X RP11-90L17 C Xq25(FHCRC)
 chrX 118Mb     AQ284513.1 T7,
AZ518589.1 T7,
AQ284512.1 SP6		  
X RP11-96G7 C Xq25(FHCRC)
 chrX 126Mb   SHGC-9476 AQ317627.1 T7,
AQ317624.1*u SP6		  
X RP11-490H23 S Xq25~26.1(SC)
 chrX 125Mb AL391002.9   AQ635018.1*u SP6  
X RP11-357N12 CR Xq25~26(FHCRC)
Xq26.3b(NCI)
 chrX 133Mb   DXS7503 AQ553839.1 T7,
AZ519469.1 SP6,
AZ254466.1*u T7		  
X RP11-486A7 CR Xq25~26(FHCRC)
Xq26.2a(NCI)
 chrX 130Mb   DXS7278, sWXD1781*u AZ303223.2 T7,
AZ303224.2 SP6		  
X RP11-488B15 R Xq25f(NCI)
 chrX 124Mb   RH63424 AZ303218.2 SP6,
AZ303217.2 T7		  
X RP11-383B16 R Xq25h~26.1a(NCI)
 chrX 127Mb   DXS7359 AZ254492.2 SP6,
AQ550758.1 SP6,
AQ550761.1 T7,
AZ254491.2 T7		  
X RP11-348J1 R Xq26.1a~26.1b(NCI)
 chrX 128Mb   DXS7865 AZ254460.1*u T7,
AZ254461.1*u SP6		  
X RP11-112K13 S Xq26.1~26.3(SC)
 chrX 135Mb AL353788.33   AQ311534.1 SP6,
AQ342746.1 T7		  
X RP11-155A5 C Xq26(FHCRC)
 chrX 130Mb   SHGC-13669 AZ516088.1 T7  
X RP11-34J1 C Xq26(FHCRC)
 chrX 135Mb   SHGC-31168 AQ046442.1 ,
AQ046443.1 		 
X RP11-478P11 C Xq26(FHCRC)
 chrX 136Mb   DXS1319 AZ254488.2 SP6,
AQ635738.1 SP6,
AQ635746.1 T7,
AZ254487.2 T7		  
X RP11-97N5 C Xq26(FHCRC)
 chrX 134Mb AL953870.2 SHGC-31813 AQ319483.1 T7,
AQ319481.1 SP6		  
X RP11-503I20 CR Xq26(FHCRC)
Xq26.3d~27.1a(NCI)
 chrX 136Mb   DXS7291 AZ303212.2 SP6,
AZ303211.2 T7		  
X RP11-483M22 S Xq26.1~27.1(SC)
 chrX 136Mb     AQ628837.1 SP6  
X RP11-65G20 S Xq26.1~27.1(SC)
 chrX 137Mb AL357692.10,
AL512374.1,
AL512375.1		   AQ200790.1  
X RP11-112H23 C Xq26~27(FHCRC)
 chrX 136Mb   SHGC-1488 AQ313077.1 SP6,
AQ343294.1 T7		  
X RP11-533L19 CR Xq26~27(FHCRC)
Xq27.2a(NCI)
 chrX 140Mb   DXS8232 AZ303296.2 SP6,
AZ303295.2 T7		  
X RP11-508C21 R Xq26.2a~26.2b(NCI)
 chrX 130Mb   DXS7278, RH63767*u, sWXD1781*u AZ303214.2 SP6,
AZ303213.3 T7		  
X RP11-51C14 S Xq26.2~27.3(SC)
 chrX 139Mb AL121875.10   AQ053564.1 ,
AQ053563.1 		 
X RP11-513O11 R Xq26.2b(NCI)
 chrX 132Mb   RH16248 AZ303293.2 T7,
AZ303294.2 SP6		  
X RP11-241O12 S Xq26.3~27.3(SC)
 chr1 204Mb AL137840.12*d   AQ485735.1 SP6,
AQ485736.1 T7		 multiple_placements_on_genome
X RP11-241O12 S Xq26.3~27.3(SC)
 chrX 141Mb AL137840.12   AQ485735.1*d SP6,
AQ485736.1*d T7		 multiple_placements_on_genome
X RP11-359I11 S Xq26.3~27.3(SC)
 chrX 139Mb AL137014.14   AQ543126.1 SP6,
AQ543128.1 T7		  
X RP11-80F18 C Xq27.1(FHCRC)
 chrX 136Mb     AQ284023.1 SP6,
AQ284026.1 T7		  
X CTD-2047N18 C Xq27(FHCRC)
 chrX 146Mb     AQ231220.1 T7,
AQ234346.1 SP6		  
X CTD-2181F3 R Xq27(UCSF)
 chrX 146Mb     AQ246909.1 T7  
X CTD-2288L23 C Xq27(UCSF)
 chrX 132Mb     B99950.1 SP6,
AQ006096.1 		 
X RP11-388L20 C Xq27(FHCRC)
 chrX 140Mb   DXS7410 AZ254689.1*u T7,
AZ254690.1*u SP6		  
X RP11-489K19 CR Xq27(FHCRC)
Xq27.3d~27.3e(NCI)
 chrX 146Mb   DXS7378 AZ303209.2 T7,
AQ633285.1 T7,
AQ633283.1 SP6,
AZ303210.2 SP6		  
X RP11-503O6 CR Xq27(FHCRC)
Xq27.3c(NCI)
 chrX 144Mb   DXS7386 AZ303216.2 SP6,
AZ303215.2 T7		  
X RP11-513H18 CR Xq27(FHCRC)
Xq27.3b~27.3c(NCI)
 chrX 142Mb   DXS7381 AZ303298.2 SP6,
AZ303297.2 T7		  
X RP11-66F1 S Xq27.1~27.3(SC)
 chr20 52Mb AL442131.2   AQ241283.1 T7,
AQ241281.1 SP6		  
X RP11-79A21 C Xq27(FHCRC)
 chrX 145Mb AL513491.2   AQ282209.1 T7,
AZ520679.1 SP6,
AQ316891.1 SP6,
AQ282207.1 SP6		  
X CTD-2108A3 C Xq27(UCSF)
Xq28(FHCRC)
 chrX 153Mb     AQ667263.1 SP6  
X CTD-2238E23 C Xq27(UCSF)
Xq28(FHCRC)
 chrX 153Mb     AQ185435.1 SP6,
AQ065568.1 T7		  
X RP11-142M16 C Xq27~28(FHCRC)
 chrX 148Mb   SHGC-35882, 18045*u AQ385857.1 T7  
X RP11-169L21 S Xq27.1~28(SC)
         AQ416495.1*u SP6  
X RP11-238E12 C Xq27~28(FHCRC)
 chrX 149Mb AC064854.2   AZ520183.1 SP6  
X RP11-243C2 S Xq27.1~28(SC)
 chrX 145Mb AL109836.27   AQ483375.1 T7,
AQ483372.1 SP6		  
X RP11-357B12 S Xq27.1~28(SC)
 chrX 144Mb   sts-H42415*d AQ552854.1 T7 multiple_placements_on_genome
X RP11-357B12 S Xq27.1~28(SC)
 chrX 56Mb   sts-H42415 AQ552854.1*d T7 multiple_placements_on_genome
X RP11-383P16 C Xq27~28(FHCRC)
 chrX 127Mb   RH76118*u AZ301099.2 SP6,
AZ301098.2 T7		  
X RP11-406D14 CR Xq27.3c~27.3d(NCI)
Xq27~28(FHCRC)
 chrX 145Mb   sWXD1447 AZ254499.2 T7,
AZ254500.2*u SP6		  
X RP11-356G18 R Xq27.3a(NCI)
 chrX 141Mb   DXS7409 AQ535824.1 T7,
AQ535823.1 SP6,
AZ254464.1*u T7,
AZ254465.1*u SP6		  
X RP11-42J13 S Xq27.3~28(SC)
 chrX 146Mb AL137841.9   AQ116292.1 ,
AQ047136.1 		 
X RP11-337E5 CR Xq28(FHCRC)
Xq28b~28c(NCI)
 chrX 150Mb   DXS7076 AZ254452.1*u T7,
AZ254453.1*u SP6		  
X RP11-405N23 CR Xq28(FHCRC)
Xq28f(NCI)
 chrX 154Mb   DXS7060*u AZ301102.2 T7,
AZ301103.2 SP6		  
X RP11-54I20 C Xq28(FHCRC)
 chrX 152Mb AF274858.3   AQ083208.1 ,
AQ083209.1 		 
X CTD-2060E7 R Xqter(UCSF)
 chrX 147Mb     AQ270084.1 T7,
AQ242541.1 SP6		  
X CTD-2088A19 R Xqter(UCSF)
 chrX 152Mb     AQ801267.1 T7  
total243C:143 R:72 S:77243239 85132243 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.