Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones |
|
|
| |
| Chr |
clone name |
Distributor1 |
FISH |
Placement on genome2 |
Placement summary3 |
Insert sequence4 |
STS4 |
BAC-ends4 |
Flag |
| Y |
RP11-414C23 |
  |
Yp11.3(FHCRC)
|
chrY 2Mb |
     |
AC006157.2 | DYS252 | AZ303265.2 SP6,
AQ552747.1 SP6,
AZ515687.2 T7 | |
| Y |
RP11-4D2 |
|
Yp11.3(FHCRC)
|
chrY 2Mb |
   |
| DYS252 | | |
| Y |
RP11-115H13 |
 |
Yp11.2(FHCRC)
Yp11.31b~11.31a(NCI)
|
chrY 6Mb |
  |
AC011297.3 | DYS266 | AQ346422.1 T7,
AQ346419.1 SP6 | |
| Y |
RP11-20H21 |
|
Yq11.2(FHCRC)
|
chrY 19Mb |
 |
| DYS211 | B85663.1 T7,
AQ008163.1 SP6 | |
| Y |
RP11-24F18 |
|
Yq11.2(FHCRC)
|
chrY 21Mb |
|
| DYS224 | B86616.1 SP6 | |
| Y |
RP11-71M14 |
|
Yq11.2(FHCRC)
|
chrY 15Mb |
|
| DYS280 | AQ236898.1 SP6 | |
| Y |
RP11-91A13 |
|
Yq11.2(FHCRC)
|
chrY 16Mb |
|
| DYS197 | AQ286312.1 SP6,
AQ286314.1 T7 | |
| Y |
RP11-26B12 |
|
Yq11.2~12(FHCRC)
|
chrY 25Mb |
|
| AFM161YF6*u, AFM161YF6*u | B86816.1 SP6,
B86817.1 T7 | |
| Y |
RP11-135H9 |
|
Yq11.22(FHCRC)
|
chrY 17Mb |
|
| DYS200 | AQ380804.1 SP6 | |
| Y |
RP11-236J18 |
|
Yq11.22(FHCRC)
|
chr8 80Mb |
|
| DYS210*d, DYS208*d | AQ486167.1 SP6,
AQ486169.1 T7 | multiple_placements_on_genome |
| Y |
RP11-236J18 |
|
Yq11.22(FHCRC)
|
chrY 19Mb |
|
| DYS208, DYS210 | AQ486167.1*d SP6,
AQ486169.1*d T7 | multiple_placements_on_genome |
| Y |
RP11-256K9 |
|
Yq11.22(FHCRC)
|
chrY 21Mb |
  |
AC007678.3 | DYS219 | | |
| Y |
RP11-65G9 |
|
Yq11.22(FHCRC)
|
chrY 21Mb |
|
AC007876.2 | DYS222, DYS221, DYS222*u | AQ237983.1 SP6,
AQ237984.1 T7 | |
| Y |
RP11-140H23 |
|
Yq11.23(FHCRC)
|
chrY 25Mb |
|
AC053490.2*d | DYS236*u | AQ387617.1 SP6,
AQ387618.1 T7 | multiple_placements_on_genome |
| Y |
RP11-140H23 |
|
Yq11.23(FHCRC)
|
chrY 23Mb |
 |
AC053490.2 | DYS236*u | AQ387617.1 SP6,
AQ387618.1 T7 | multiple_placements_on_genome |
| Y |
RP11-185N10 |
|
Yq11.23(FHCRC)
|
chrY 21Mb |
|
| DYS222, DYS221, DYS222*u | AQ420969.1 SP6 | |
| Y |
RP11-5C5 |
|
Yq11.23(FHCRC)
|
|
|
AC010080.2*u | DYS223*u | B48115.1*u T7,
B63441.1*u SP6,
B63442.1*u T7 | |
| total | 15 | C:15 R:1 S:0 | 15 | 14 | | 6 | 15 | 13 | |
1 Distributor: , Children's hospical Oakland research institute; , Research Genetics; 
, Sanger Center
2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included
3 Placement summary indicates sequences used for clone placement.
BAC-end sequence aligned in the plus orientation
BAC-end sequence aligned in the minus orientation
insert sequence
STS aligned
insert sequence has clone end information.
4 Sequence-tag
*d indicates sequences that disagree with placement on the genome.
*u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.
Genomic
Biology
