| Acidithiobacillus
ferrooxidans (B) |
TIGR |
|
Actinobacillus
actinomycetemcomitans (B)
|
|
| Aedes
aegypti (E) |
MosquitoDB |
| Aedes
albopictus (E) |
MosquitoDB |
| Aedes
triseriatus (E) |
MosquitoDB
|
| Aeropyrum
pernix (A) |
NITE
|
| Agrobacterium
tumefaciens (B) |
UWash/Dupont |
|
Amblyomma
americanum (E)
|
|
| Anopheles
gambiae
(E) |
MosquitoDB
|
| Apis
mellifera ligustica (common honeybee) (E)
|
BCUI |
| Aquifex
aeolicus (B) |
Diversa |
| Arabidopsis
thaliana (E) |
CBC,
Stanford,
TAIR,
TIGR, WashU
|
| Archaeoglobus
fulgidus
(A) |
TIGR
|
| Aspergillus
fumigatus (E) |
Sanger,
TIGR
|
| Aspergillus
nidulans (E) |
ACGT |
|
Aspergillus
niger (E)
|
|
| Babesia
bovis (E) |
Sanger
|
|
Bacillus
anthracis (B)
|
|
| Bacillus
halodurans (B) |
JMSTC |
|
Bacillus
stearothermophilus (B)
|
|
| Bacillus
subtilis (B) |
International
collaboration |
|
Bacillus
thuringiensis insect plasmid (B) |
Sanger
|
| Bacteroides
fragilis (B) |
Sanger
|
| Bartonella
henselae (B) |
Uppsala
Univ. |
| Bartonella
quintana
(B) |
Uppsala
Univ. |
| Bordetella
bronchiseptica (B) |
Sanger
|
| Bordetella
parapertussis
(B) |
Sanger
|
| Bordetella
pertussis (B) |
Sanger
|
| Borrelia
burgdorferi (B) |
TIGR
|
| Borrelia
hermsii (B) |
UMinn |
| Bos
taurus (bovine) (E) |
Baylor,
BCUI,
GSC |
|
Brassica
napus (oilseed rape) (E) |
CBC,
|
| Brucella
abortus (B) |
UMinn |
| Brucella
suis (B) |
TIGR |
| Brugia
malayi (E) |
Nembase,
Sanger |
| Buchnera
sp. (E) |
Riken-GSC |
|
Burkholderia
cepacia (B) |
Sanger,DOE-JGI
|
|
Burkholderia
fungorum (B) |
DOE-JGI |
|
Burkholderia
mallei (B) |
TIGR
|
|
Burkholderia
pseudomallei (B) |
Sanger
|
| Caenorhabditis
briggsae (E) |
WashU,
WormDB
|
| Caenorhabditis
elegans (E) |
GSC,
Sanger,
WashU, WormDB |
| Candida
albicans (E) |
Sanger,
Stanford
|
| Campylobacter
jejuni (B) |
Sanger
|
| Carboxydothermus
hydrogenoformans (B) |
TIGR |
| Caulobacter
crescentus (B) |
TIGR |
| Chicken
(Gallus gallus) (E) |
Sanger
|
| Chimpanze (E) |
Baylor |
| Chlamydia
pneumoniae (B) |
Gene Alliance,
Genset,
Stanford,
TIGR,
UCB |
| Chlamydia
trachomatis (B) |
Stanford,
TIGR,
UCB |
| Chlamydophila
abortus (B) |
Sanger |
| Chlamydophila
caviae (B) |
TIGR |
|
Chlamydomonas
reinhardtii (E)
|
|
| Chlamydophila
psittaci (B) |
TIGR |
| Chlorobium
tepidum (B) |
TIGR |
| Chloroflexus
aurantiacus (B) |
DOE-JGI |
| Chromobacterium
violaceum (B) |
Braz.
Consortium |
| Clavibacter
michiganensis
(B) |
Sanger |
| Ciona
intestinalis (sea squirt) (E)
|
DOE-JGI |
| Clostridium
acetobutylicum (B) |
DOE-JGI |
| Clostridium
botulinum (B) |
Sanger
|
| Clostridium
difficile
(B) |
Sanger
|
| Clostridium
tetani (B) |
GGL |
| Clostridium
thermocellum (B) |
DOE-JGI |
| Corynebacterium
diphtheriae (B) |
Sanger
|
| Corynebacterium
glutamicum (B) |
KK-Jp,
LB |
| Cowdria
ruminantium (B) |
Sanger |
| Coxiella
burnetii (B) |
TIGR |
| Crinipellis
perniciosa
(B) |
Braz.
Consortium |
|
Cryptococcus
neoformans (E)
|
ACGT,
GSC,
Stanford,
TIGR |
| Cryptosporidium
parvum
(E) |
UMinn |
| Cules
pipiens
(E) |
MosquitoDB |
| Cytophaga
hutchinsonii (B) |
DOE-JGI |
| Danio
rerio (zebrafish) (E) |
Sanger
|
| Dehalococcoides
ethenogenes (B) |
TIGR |
| Deinococcus
radiodurans (B) |
TIGR
|
|
Desulfitobacterium
hafniense (B) |
DOE-JGI |
| Desulfovibrio
vulgaris (B) |
TIGR |
| Dictyostelium
discoideum (E) |
Baylor,
GMP,
Jena-UC,Sanger
|
| Drosophila
melanogaster (fruitfly) (E) |
Baylor,
Flybase,Fruitfly,
Sanger,
|
| Escherichia
coli (B) |
Univ.Wiscosin
|
| Encephalitozoon
cuniculi (E) |
Genoscope |
| Entamoeba
histolytica (E) |
TIGR
|
| Enterococcus
faecalis (B) |
TIGR |
| Enterococcus
faecium (B) |
Baylor,
DOE-JGI |
| Erwinia
carotovora (B) |
Sanger
|
| Erwinia
chrysanthemi (B) |
TIGR,
Univ. Wisconsin |
|
Ferroplasma
acidarmanus (A) |
DOE-JGI |
| Fibrobacter
succinogenes
(B)
|
TIGR,
NACRB
|
| Francisella
tularensis
(B)
|
European
& North American Consortium |
| Fugu
rubripes (E) |
DOE-JGI,
Sanger |
|
Fusarium
sporotrichioides (E)
|
|
| Fusobacterium
nucleatum (B) |
Baylor |
| Gallus
gallus (chicken) (E) |
Sanger
|
| Giardia
lamblia (E) |
MBL |
| Geobacter
sulfurreducens (B) |
TIGR |
| Glycina
max (soybean) (E) |
BCUI,CBC |
| Haemophilus
influenzae (B) |
TIGR |
| Haemophilus
ducrevi (B) |
UWash |
| Halobacterium
halobium plasmid (A) |
DOE-JGI |
| Halobacterium
salinarium
(A) |
Max-Planck |
| Helicobacter
pylori (B) |
TIGR
|
|
Homo
sapiens (human) (E)
|
ACGT,
Baylor,Caltech,CEPH,CHLC,
DOE-JGI, Genethon,GSC,
Kazuza,LBL,
LAL,LLNL,
NHGRI,Sanger,
Stanford,TIGR,
Utah,Uppsala
GSL,UWash,
WashU,MIT
|
| Klebsiella
pneumoniae (B) |
WashU |
| Lactobacillus
acidophilus (B) |
Environ.
Biotechnology Inst. |
| Lawsonia
intracellularis (B) |
UMinn |
| Legionella
pneumophila (B) |
Columbia
Genome Center |
| Leifsonia
xyli subsp. xyli (B) |
AEG |
| Leishmania
major (E) |
Sanger/European
Consortium, SBRI |
| Leptospira
interrogans (B) |
Chinese
Nat. Human Genome Ct. Shanghai |
| Listeria
innocua (B) |
GMP |
| Listeria
monocytogenes (B) |
GMP |
|
Loblolly
pine (E)
|
|
| Lotus
japonicus (E) |
Kazuza
|
| Magnetospirillum
magnetotacticum (B) |
DOE-JGI |
| Magnetococcus
MC-1 (B) |
DOE-JGI |
| Marinobacillus
iheyensis (B) |
Japan
Marine Science & Tech. Ctr. |
| Maize
(Zea mays) (E) |
BCUI,
CBC,
MaizeDB,Stanford,
ZmDB |
| Mannheimia
haemolytica (B) |
Baylor |
|
Medicago
truncatula (E)
|
|
| Mesorhizobium
loti (B) |
Kazuza |
| Methanobacterium
thermoautotrophicum (A) |
OhioEU |
| Methanococcus
jannaschii (A) |
TIGR |
| Methanococcus
maripaludis
(A) |
UWash
|
| Methanogenium
frigidum
(A) |
AGRF |
| Methanosarcina
barkeri
(A) |
DOE-JGI |
| Methanosarcina
mazei
(A) |
GGL |
| Methylobacterium
extorquens (B) |
UWash |
| Methylococcus
capsulatus (B) |
TIGR |
| Microcystis
sp. (B) |
Pasteur
Inst.
|
|
Mus
musculus (mouse) (E)
|
|
| Mycobacterium
avium (B) |
TIGR |
| Mycobacterium
bovis (B) |
Sanger
|
| Mycobacterium
leprae (B) |
Sanger
|
| Mycobacterium
marinum (B) |
Sanger
|
| Mycobacterium
paratuberculosis (B) |
UMinn |
| Mycobacterium
smegmatis (B) |
TIGR |
| Mycobacterium
tuberculosis (B) |
Sanger |
| Mycoplasma
genitalium (B) |
TIGR |
| Mycoplasma
pulmonis (B) |
Genoscope |
Neisseria
gonorrhoeae (B)
|
|
| Neisseria
meningitidis (B) |
Sanger,
TIGR
|
|
Neurospora
crassa (E)
|
|
| Nitrosomonas
europaea (B) |
DOE-JGI |
| Nostoc
punctiforme (B) |
DOE-JGI |
| Oryza
sativa (rice) (E) |
CBC,
RGRP-JP, TIGR |
| Pan
troglodytes (chimpanze) (E) |
Baylor |
| Pasteurella
multocida
(B) |
UMinn |
| Phanerochaete
chrysosporium (E) |
DOE-JGI |
| Photorhabdus
luminescens (B) |
GMP |
| Pig
(Sus scrofa) (E) |
BCUI |
| Plasmodium
chabaudi (E) |
Sanger
|
| Plasmodium
falciparum (E) |
Sanger,
Stanford,
TIGR,PlasmoDB
|
| Plasmodium
vivax (E) |
Sanger |
| Plasmodium
yoelii (E) |
TIGR |
| Pneumocystis
carinii (E) |
Sanger
|
| Porphyra
yezoensis (E) |
Kazuza
|
| Porphyromonas
gingivalis (B) |
TIGR |
| Potato (E) |
TIGR |
| Prochlorococcus
marinus (B) |
DOE-JGI |
| Pseudomonas
aeruginosa (B) |
UWash |
| Pseudomonas
fluorescens (B) |
DOE-JGI |
| Pseudomonas
putida (B) |
TIGR |
| Pseudomonas
syringae (B) |
TIGR |
| Pyrobaculum
aerophilum
(A) |
Caltech/UCLA |
| Pyrococcus
abyssi (A) |
Genoscope |
| Pyrococcus
horikoshii (A) |
NITE
|
| Pyrococcus
furiosus
(A) |
CMB/Utah |
| Ralstonia
metallidurans (B) |
DOE-JGI |
| Ralstonia
solanacearum (B) |
Genoscope |
| Rattus
norvegicus (rat) (E) |
Baylor,
GSC |
| Rhodobacter
sphaeroides (B) |
DOE-JGI,
Baylor
|
| Rhodopseudomonas
palustris (B) |
DOE-JGI |
| Rice
(Oryza
sativa (E))
|
CBC,
RGRP-JP,TIGR |
| Rickettsia
conorii (B) |
Genoscope |
| Rickettsia
prowazekii (B) |
UUppsala/SFSR |
| Tropheryma
whippelii |
Sanger |
| Rhizobium
leguminosarum (B) |
Sanger
|
| Saccharomyces
cerevisiae (E) |
Sanger,
SGD,Stanford,
WashU,
YPD |
| Salmonella
enteritidis (B) |
BCUI |
| Salmonella
paratyphi (B) |
WashU |
| Salmonella
typhi (B) |
Sanger,
UWisc |
| Salmonella
typhimurium (B) |
WashU
|
| Schizosaccharomyces
pombe (E) |
Sanger,
YPD |
| Shewanella
oneidensis (putrefaciens) (B) |
TIGR |
| Shigella
flexneri (B) |
UWisc
|
| Sinorhizobium
meliloti (B) |
Stanford |
| Solanum
tuberosum (potato) (E) |
TIGR |
| Soybean
(Glycina max) (E) |
BCUI,CBC |
| Sphingomonas
aromaticivorans (B) |
DOE-JGI |
|
Spiroplasma
kunkelii (B)
|
|
|
Staphylococcus
aureus
(B)
|
|
| Staphylococcus
epidermis (B) |
TIGR |
| Streptococcus
agalactiae (B) |
GMP |
| Streptococcus
equi (B) |
Sanger
|
|
Streptococcus
mutans (B)
|
|
| Streptococcus
pneumoniae (B) |
TIGR |
|
Streptococcus
pyogenes (B)
|
|
| Streptococcus
uberis
(B) |
Sanger
|
| Streptomyces
coelicolor (B) |
Sanger
|
| Sus
scrofa (pig) (E) |
BCUI |
| Synechococcus
sp. (B) |
DOE-JGI |
Synechocystis
sp. (B) |
Kazuza |
| Thalassiosirra
pseudonana (E) |
DOE-JGI |
| Theileria
annulata (E) |
Sanger
|
| Theileria
parva (E) |
TIGR |
|
Thermobifida
fusca (B)
|
|
| Thermoplasma
acidophilum (A) |
Max-Planck |
| Thermoplasma
volcanium
(A) |
NIBHT-Jp |
| Thermotoga
maritima (B) |
TIGR |
| Thermus
thermophilus (B) |
GGL |
| Thiobacillus
ferrooxidans (B) |
DOE-JGI |
| Treponema
denticola
(B) |
TIGR
|
| Treponema
pallidum
(B) |
TIGR
|
| Trypanosoma
brucei (E) |
Sanger,
TIGR |
| Trypanosoma
cruzi (E) |
TIGR,
Uppsala GSL |
| Ureaplasma
urealyticum (B) |
UAB |
| Xanthomonas
citri (B) |
ONSA |
| Xylella
fastidiosa
(B) |
ONSA |
| Xylella
fastidiosa (almond) (B) |
DOE-JGI |
| Xylella
fastidiosa (oleander) (B) |
DOE-JGI |
| Yersinia
enterocolitica (B) |
Sanger |
| Yersinia
pestis
(B) |
Sanger,
UWisc |
| Yersinia
pseudotuberculosis
(B) |
LLNL |
| Wolbachia-like
endosymbiont of D. melanogaster (B) |
TIGR
|
| Wolbachia-like
endosymbiont of O. volvulus (B)
|
Sanger |
|
|
|
|
Zebrafish
(Danio rerio) (E)
|
|
