GEO Browser - GEO

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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154		Mus musculus		BIGWIG
GSE207058	BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	BEDGRAPH BIGWIG WIG XLSX	Elena Pugacheva	Jan 03, 2024
GSE171599	MacroH2A histone variants modulate enhancer activity to repress oncogenic programs and cellular reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	BED BIGWIG BW H5 SRA Run Selector	Alexandre Gaspar-Maia	Feb 21, 2023
GSE127894	Phosphorylated MED1 Links Transcription Recycling and Cancer Growth	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BIGWIG BW TXT SRA Run Selector	Zhong Chen	Apr 20, 2022
GSE151804	The ZMYND8-regulated Mevalonate Pathway Endows YAP-High Intestinal Cancer with Metabolic Vulnerability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BIGWIG BW TXT SRA Run Selector	Qiang Pan	Apr 21, 2021
GSE147817	Pharmacological LSD1 inhibition in MCC	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	50	BIGWIG TSV TXT	Anna Obenauf	Sep 04, 2020
GSE115463	TP63-mediated enhancer reprogramming drives the squamous subtype of pancreatic ductal adenocarcinoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	92	BIGWIG	Tim D D Somerville	Nov 13, 2018
GSE121723	Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	364	BED BIGWIG BW CEL	Bernhard Radlwimmer	Nov 05, 2018
GSE106666	Repression of Human and Mouse Brain Inflammaging Transcriptome by Broad Gene Body Histone Hyperacetylation (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	45	BIGWIG SRA Run Selector	Jing-Dong Jackie Han	Jul 05, 2018
GSE104309	A TFIID-SAGA perturbation that targets MYB and suppresses acute myeloid leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	36	BIGWIG	Yali XU	Jan 08, 2018
GSE85155	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [uvCLAP CLIP-seq]	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	52	BED BIGWIG NARROWPEAK SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE85045	ZSCAN5B and its primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	BIGWIG WIG	Lisa J Stubbs	Feb 16, 2017
GSE93282	Long noncoding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	9	BIGWIG BW	Justin Choi	Jan 07, 2017
GSE79360	Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	14	BIGWIG XLSX SRA Run Selector	Anja Fides Hohmann	May 01, 2016
GSE79391	Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BIGWIG	Anja Fides Hohmann	May 01, 2016
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE49417	The conserved organization of the human and mouse transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	64	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF	ENCODE DCC	Nov 20, 2014
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014