GEO Browser - GEO

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88 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16791				BROADPEAK
GSE99669	The 8p11-p12 amplicon oncogene ASH2L regulates expression of genes involved in tumorigenic processes via promoter H3K4me3 in luminal breast cancer. (SUM-44 ASH2L knockdown H3K4me3 ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BROADPEAK SRA Run Selector	Gary Hardiman	May 24, 2024
GSE239481	Defining Cis-regulatory Elements and Transcription Factors that Control Human Cortical Interneuron Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	118	BIGWIG BROADPEAK NARROWPEAK	Kristen Kroll	Apr 17, 2024
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023
GSE248980	Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BROADPEAK BW NARROWPEAK TXT	Ruben Schep	Nov 30, 2023
GSE235745	Dynamic enhancer landscapes in human craniofacial development [human ChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BROADPEAK BW	Laura E Cook	Sep 11, 2023
GSE235858	Dynamic enhancer landscapes in human craniofacial development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BROADPEAK BW NARROWPEAK RESULTS SNAP TXT	Laura E Cook	Sep 11, 2023
GSE241450	Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	119	BROADPEAK BW NARROWPEAK TAB VCF	Salih Topal	Sep 11, 2023
GSE221046	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BROADPEAK BW NARROWPEAK	Konsta Karttunen	Aug 11, 2023
GSE221053	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BROADPEAK BW HIC NARROWPEAK TXT	Konsta Karttunen	Aug 11, 2023
GSE210220	Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	5	BED BROADPEAK BW	Yueyuan Zheng	Aug 04, 2023
GSE210858	MAF functions as a pioneer transcription factor that initiates and sustains oncogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	49	BED BROADPEAK BW TXT	Nikolaos Trasanidis	Aug 01, 2023
GSE223834	Integrative genome-wide analysis of PBMCs confirmed SOD1-specific functionality of ATF3 in ALS blood	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BROADPEAK	Karin M Danzer	Jul 01, 2023
GSE227025	Causal linkage of presence of mutant NPM1 to efficacy of novel therapeutic agents against AML cells with mutant NPM1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BROADPEAK NARROWPEAK	Xiaoping Su	Jun 14, 2023
GSE222571	Haploinsufficiency of NFKBIA reshapes the epigenome and imparts disease fate in diffuse gliomas	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH BROADPEAK	Lluis Espinosa	Apr 28, 2023
GSE210277	Synthetic epigenetic reprogramming of mesenchymal to epithelial states using the CRISPR/dCas9 platform in triple negative breast cancer	Methylation profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	45	BROADPEAK BW IDAT NARROWPEAK	Joe Cursons	Apr 17, 2023
GSE182017	Pluripotency-Independent Induction of Human Trophoblast Stem Cells from Fibroblasts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	114	BED BROADPEAK BW NARROWPEAK TXT	Yosef Buganim	Feb 21, 2023
GSE213533	FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancer	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED BROADPEAK	Serap Erkek Özhan	Feb 20, 2023
GSE181829	Targeting Menin disrupts the KMT2A/B and polycomb balance to paradoxically activate bivalent genes	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	71	BROADPEAK NARROWPEAK TXT	Mark Dawson	Jan 13, 2023
GSE207401	DNA elements tether canonical Polycomb Repressive Complex 1 to human genes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	BEDGRAPH BROADPEAK TXT	Yuri Schwartz	Jan 13, 2023
GSE181015	ERK signalling orchestrates neural differentiation by promoting the polycomb repressive complex.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	47	BIGWIG BROADPEAK	Kate G Storey	Sep 16, 2022