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10400 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154
GSE65191	Nucleosome locations in human oral keratinocytes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BAI BAM SRA Run Selector	Guy Lyons	Dec 31, 2017
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	BAM BIGWIG BROADPEAK NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE29069	Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BAM	Gary Chung Hon	Sep 16, 2011
GSE29120	Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954)	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29127	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE32213	Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin hubs	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM XLS SRA Run Selector	Xun Lan	Jul 01, 2012
GSE32625	RNA-Seq of human neurons derived from iPS cells Reveals candidate long non-coding RNAs Involved in neurogenesis and neuropsychiatric disorders.	Expression profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Mingyan Lin	Oct 06, 2011
GSE33632	Genome-wide analysis of histone eviction by FAIRE-Seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	13	BAM BED SRA Run Selector	Baoxu Pang	Jun 04, 2013
GSE33634	Topoisomerase II inhibitors and histone eviction	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	62	BAM BED	Baoxu Pang	Jun 04, 2013
GSE33912	Functional Identification of Critical Bmi1 target genes in Neural Progenitor and Malignant Glioma cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BAM XLSX SRA Run Selector	Gaetano Gargiulo	May 21, 2013
GSE34740	K562 polyA RNA-Seq	Expression profiling by high throughput sequencing	Homo sapiens	9	BAM SRA Run Selector	Nataly Moran Cabili	Nov 14, 2012
GSE39878	RNA-DNA DIFFERENCES IN NASCENT RNA	Expression profiling by high throughput sequencing	Homo sapiens	5	BAM TXT SRA Run Selector	Isabel Xiaorong Wang	Feb 21, 2014