GEO Browser - GEO

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37 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL9185				BIGWIG
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE30761	Mammalian X upregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Mus musculus Mus musculus x Mus spretus	60	BED BIGWIG CEL GFF PAIR TXT	Xinxian Deng	Jul 19, 2011
GSE32218	Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BIGWIG NARROWPEAK SRA Run Selector	ENCODE DCC	Sep 20, 2011
GSE35370	Essential and unexpected role of YY1 to promote mesodermal cardiac differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED BIGWIG SRA Run Selector	Serge Gregoire	Jun 01, 2013
GSE36030	Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	85	BIGWIG NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Apr 11, 2012
GSE37074	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	53	BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Oct 03, 2012
GSE37909	RNA-seq from ENCODE/Caltech (Mouse)	Expression profiling by high throughput sequencing	Mus musculus	4	BIGWIG SRA Run Selector	ENCODE DCC	May 10, 2012
GSE40238	Genome-wide maps of FoxP3 binding in transduced CD4+ T cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED BIGWIG BW WIG SRA Run Selector	CBDM Lab	Aug 23, 2012
GSE40278	A multiply redundant genetic switch locks in the transcriptional signature of T regulatory cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	64	BED BIGWIG BW CEL WIG	CBDM Lab	Aug 23, 2012
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE51338	Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis	Other	Mus musculus	81	BEDGRAPH BIGWIG BROADPEAK TXT WIG	ENCODE DCC	Nov 14, 2014
GSE54520	ChIP-Seq analysis of HNF4A and FOXA2 in embryonic mouse liver	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED BIGWIG WIG SRA Run Selector	Pamela Hoodless	Aug 31, 2014
GSE67859	Detection of chromatin accessibility in WT and SRC-2-/- mice in liver	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BIGWIG SRA Run Selector	Bokai Zhu	Dec 07, 2015
GSE67860	Coactivator-Dependent Oscillation of Chromatin Accessibility Dictates Circadian Gene Amplitude through REV-ERB Loading	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BIGWIG BW	Bokai Zhu	Dec 07, 2015
GSE83221	Genome-wide maps of N_NUP98 and NUP98-TOP1 and MLL1 co-bound targets and their chromatin state in NUP98 fusion transformed cells.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BIGWIG SRA Run Selector	Haiming Xu	Dec 21, 2016
GSE87179	ATACseq in primary pituitary cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BIGWIG SRA Run Selector	ALEXANDRE MAYRAN	Jan 24, 2018
GSE87185	Pioneer factor Pax7 deploys a stable enhancer repertoire for specification of cell fate	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	86	BIGWIG	ALEXANDRE MAYRAN	Jan 24, 2018
GSE98300	Genome-wide transcriptional and epigenomic map of primary and metastatic Sonic Hedgehog subgroup medulloblastomas	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BIGWIG SRA Run Selector	Haotian Zhao	Apr 28, 2017