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Series GSE100891 Query DataSets for GSE100891
Status Public on Jul 06, 2017
Title Identification of downstream genes regulated by YAP1 through knockdown and overexpression of YAP1 in U251 cell with a stably expression of mutant APP
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Upstream regulator genes are central hub nodes in a network and their expression may response to upstream trigger factors of a disease and influence expression of hundreds of downstream genes, and further facilitate disease development. Therefore, the identification of upstream regulator genes are vital for understanding the pathophysiology of the disease and seek for potential therapeutic targets for the treatment of the disease. YAP1 was identified as a candidate upstream regulator for Alzheimer's disease (AD) in our study. To test whether expression alterations of YAP1 can lead to AD expression network disturbance and thus promoting AD progression, we knockdown and overexpressed YAP1 in U251 cell line with a stably expression of mutant APP (K670N/M671L) (U251-APP cells). RNA-seq (by IlluminaHiseq 4000) and following analyses were then performed to detect genes whose expression were influenced by YAP1 expression changes. The results indicated that expression alterations of YAP1 can significantly disturbe the whole AD expression network.
 
Overall design YAP1 inteference and overexpression were performed in U251 cell with a stably expression of mutant APP (K670N/M671L) (U251-APP cells) with three biological triplicates for each condition (siNC, si-YAP1, vector, and YAP1, one outlier for YAP1 overexpression was removed). Differential expression genes were obtained by comparing gene expression levels in YAP1 knockdown (si-YAP1) or overexpression (YAP1) cells with control cells (siNC or vector).
 
Contributor(s) Xu M, Zhang D, Luo R, Wu Y, Zhou H, Kong L, Bi R, Yao Y
Citation(s) 28923553
Submission date Jul 06, 2017
Last update date May 15, 2019
Contact name Yong-Gang Yao
E-mail(s) yaoyg@mail.kiz.ac.cn
Organization name Kunming Institute of Zoology
Department Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences & Yunnan Province
Street address 32 Jiaochang Donglu
City Kunming
State/province Yunnan
ZIP/Postal code 650223
Country China
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (11)
GSM2695666 siNC biological replication 1
GSM2695667 siNC biological replication 2
GSM2695668 siNC biological replication 3
Relations
BioProject PRJNA393355
SRA SRP111293

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Supplementary file Size Download File type/resource
GSE100891_YAP1_interference_overexpression_rlog_expression.txt.gz 2.2 Mb (ftp)(http) TXT
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