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Series GSE101761 Query DataSets for GSE101761
Status Public on Jul 01, 2019
Title High malignant potential of betel quid-associated oral verrucous hyperplasia
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Objectives. Oral verrucous hyperplasia (OVH) is commonly observed in the oral cavity of betel quid chewers that histologically display epithelial hyperplasia with or without dysplasia. Because of the high frequency of synchronous OVH adjacent to oral carcinomas, OVH is considered a potential malignant disorder, and studies of prognostic factors and genetic alterations are required. Materials and Methods. We conducted a follow-up study of 269 OVH patients at Chi-Mei Medical Center. A Kaplan-Meier analysis and Cox's proportional-hazards regression model were used to calculate the survival rate and prognostic factors of disease recurrence and transformation. Copy number variations (CNVs) were analyzed using a single-nucleotide polymorphism (SNP) array. Results. The 5-year disease-free and cancer-free survival rates of patients with OVH were 52% and 77%, respectively. Heavy betel quid (BQ) chewing (>20 nuts/day), the severity of oral submucosal fibrosis (OSF), and non-buccal and non-tongue lesions were high risk factors for malignant transformation, while dysplasia did not affect outcomes. A genetic analysis showed that OVH already possessed many CNVs present in oral squamous cell carcinoma (OSCC), and a bioinformatics analysis of CNV-associated genes revealed that the upregulation of CTTN, FOLR3, ORAOV1, PPFIA1, and RNF121 could help identify high-risk OVH patients. Conclusions. BQ-associated OVH has a high malignant potential, and more attention must be paid to OVH patients who have a heavy BQ chewing habit and advanced OSF, and whose tumor is located at non-buccal and non-tongue regions. The five CNV-associated genes can be used for early diagnosis and for predicting the prognosis.
 
Overall design Peripheral blood, VH and oral cancer tissues were obtained from two distinct Taiwanese oral cancer patients. The copy number variations in the three different stage of lesion were identified. Comparing CNVs in serial pre-cancer (VH) and cancer samples could shed the light on tumor formation and progression.
 
Contributor(s) Wu M, Luo J
Citation(s) 29377391
Submission date Jul 21, 2017
Last update date Jul 25, 2021
Contact name Ji-Dung Luo
E-mail(s) adamjdluo0323@gmail.com
Organization name Chang Gung University
Department Graduate Institute of Biomedical Sciences
Street address No. 259, Wen-Hua 1st road
City Taoyuan
ZIP/Postal code 333
Country Taiwan
 
Platforms (1)
GPL20166 Illumina HumanOmniZhongHua-8 v1.0 Beadchip
Samples (8)
GSM2714741 OSCC2_Blood_DNA O0106-11
GSM2714742 OSCC1_Blood_DNA O00229-7
GSM2714743 OSCC2_Tumor_DNA 1303-6353-0
Relations
BioProject PRJNA395373

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101761_Matrix_processed.xlsx 344.8 Mb (ftp)(http) XLSX
GSE101761_Matrix_signal_intensities.xlsx 206.7 Mb (ftp)(http) XLSX
GSE101761_RAW.tar 479.7 Mb (http)(custom) TAR (of TXT)
Processed data provided as supplementary file
Processed data are available on Series record

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