NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE102497 Query DataSets for GSE102497
Status Public on Apr 11, 2018
Title Systematic discovery of RNA binding proteins that control microRNA processing
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We report the modulation of miRNA processing by several RNA binding proteins through the implementation of a high-throughput computational screen of eCLIP data
 
Overall design Examinaiton of eCLIP data for enrichment at miRNA loci, modulation of candidate RBPs and small RNA-seq and biochemical validation
 
Contributor(s) Nussbacher JK, Yeo EW
Citation(s) 29547715
Submission date Aug 10, 2017
Last update date Jul 25, 2021
Contact name Gene Yeo
E-mail(s) geneyeo@ucsd.edu
Organization name UCSD
Street address 2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (68)
GSM2739595 bud13 knockdown hepg2 replicate 1
GSM2739596 bud13 knockdown hepg2 replicate 2
GSM2739597 non-targeting control hepg2 replicate 1
Relations
BioProject PRJNA397894
SRA SRP115215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102497_RAW.tar 60.2 Mb (http)(custom) TAR (of BW)
GSE102497_featureCounts_hg19_mirnas_only_mirbase_features.txt.gz 71.3 Kb (ftp)(http) TXT
GSE102497_featureCounts_hg19_mirnas_only_mirbase_features_batch2.txt.gz 62.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap