GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE256594

Query DataSets for GSE256594

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR107BQR)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing NHR-85-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR107BQR/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8106210	TF ChIP-seq from whole organism (ENCLB441ODB)
GSM8106211	TF ChIP-seq from whole organism (ENCLB169AGL)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256594_ENCFF015UWH_optimal_IDR_thresholded_peaks_ce10.bigBed	187.5 Kb	(ftp)(http)	BIGBED
GSE256594_ENCFF056IWK_optimal_IDR_thresholded_peaks_ce10.bigBed	184.0 Kb	(ftp)(http)	BIGBED
GSE256594_ENCFF192LRO_optimal_IDR_thresholded_peaks_ce11.bed.gz	52.0 Kb	(ftp)(http)	BED
GSE256594_ENCFF209XYV_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF268JWR_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF361WBB_optimal_IDR_thresholded_peaks_ce10.bed.gz	80.4 Kb	(ftp)(http)	BED
GSE256594_ENCFF372VKE_peaks_ce10.bed.gz	761.4 Kb	(ftp)(http)	BED
GSE256594_ENCFF396NWJ_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF404VSX_optimal_IDR_thresholded_peaks_ce11.bigBed	147.7 Kb	(ftp)(http)	BIGBED
GSE256594_ENCFF456DDL_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF507NHS_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF521IOX_peaks_ce11.bigBed	429.0 Kb	(ftp)(http)	BIGBED
GSE256594_ENCFF585KQX_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256594_ENCFF672ZSH_peaks_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE256594_ENCFF784RIU_peaks_ce11.bed.gz	210.4 Kb	(ftp)(http)	BED
GSE256594_ENCFF784WSM_optimal_IDR_thresholded_peaks_ce10.bed.gz	79.4 Kb	(ftp)(http)	BED
GSE256594_RAW.tar	121.2 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA