NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE256849 Query DataSets for GSE256849
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR213XFQ)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing DAO-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR213XFQ/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 24, 2024
Last update date Oct 24, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8106668 TF ChIP-seq from whole organism (ENCLB476NLU)
GSM8106669 TF ChIP-seq from whole organism (ENCLB993BYZ)
Relations
Reanalyzed by GSE280222

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE256849_ENCFF034WER_optimal_IDR_thresholded_peaks_ce11.bigBed 54.6 Kb (ftp)(http) BIGBED
GSE256849_ENCFF052ZHC_peaks_and_background_as_input_for_IDR_ce10.bigBed 753.4 Kb (ftp)(http) BIGBED
GSE256849_ENCFF084GWQ_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE256849_ENCFF174KAZ_optimal_IDR_thresholded_peaks_ce11.bed.gz 10.5 Kb (ftp)(http) BED
GSE256849_ENCFF216MNW_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256849_ENCFF266UTB_optimal_IDR_thresholded_peaks_ce10.bed.gz 11.0 Kb (ftp)(http) BED
GSE256849_ENCFF348PCL_peaks_and_background_as_input_for_IDR_ce11.bigBed 752.7 Kb (ftp)(http) BIGBED
GSE256849_ENCFF515CZW_peaks_and_background_as_input_for_IDR_ce11.bed.gz 424.2 Kb (ftp)(http) BED
GSE256849_ENCFF566VKC_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE256849_ENCFF579WZL_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256849_ENCFF600SHD_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE256849_ENCFF734PCV_optimal_IDR_thresholded_peaks_ce10.bigBed 55.1 Kb (ftp)(http) BIGBED
GSE256849_ENCFF933LJN_peaks_and_background_as_input_for_IDR_ce10.bed.gz 424.8 Kb (ftp)(http) BED
GSE256849_ENCFF981BYD_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE256849_RAW.tar 121.8 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap