GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE257427

Query DataSets for GSE257427

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR359GJP)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing F13H6.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR359GJP/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8107661	TF ChIP-seq from whole organism (ENCLB072QTI)
GSM8107662	TF ChIP-seq from whole organism (ENCLB548QZK)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257427_ENCFF032TZU_peaks_and_background_as_input_for_IDR_ce11.bed.gz	739.6 Kb	(ftp)(http)	BED
GSE257427_ENCFF057MIH_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257427_ENCFF152VTB_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257427_ENCFF402AFV_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257427_ENCFF501VXJ_optimal_IDR_thresholded_peaks_ce11.bed.gz	97.9 Kb	(ftp)(http)	BED
GSE257427_ENCFF504QPO_optimal_IDR_thresholded_peaks_ce10.bed.gz	97.7 Kb	(ftp)(http)	BED
GSE257427_ENCFF724VTZ_optimal_IDR_thresholded_peaks_ce11.bigBed	190.6 Kb	(ftp)(http)	BIGBED
GSE257427_ENCFF743KXI_peaks_and_background_as_input_for_IDR_ce10.bed.gz	739.7 Kb	(ftp)(http)	BED
GSE257427_ENCFF755QYL_optimal_IDR_thresholded_peaks_ce10.bigBed	234.5 Kb	(ftp)(http)	BIGBED
GSE257427_ENCFF857OOJ_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257427_ENCFF870SZB_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257427_ENCFF925UAC_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257427_ENCFF927SDO_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257427_ENCFF930LKL_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257427_RAW.tar	123.4 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA