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Series GSE257439 Query DataSets for GSE257439
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR260GEE)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing ETS-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR260GEE/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8107684 TF ChIP-seq from whole organism (ENCLB914EEF)
GSM8107685 TF ChIP-seq from whole organism (ENCLB800BRQ)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257439_ENCFF054ZPG_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257439_ENCFF066IFF_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257439_ENCFF092LPS_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257439_ENCFF170GHK_optimal_IDR_thresholded_peaks_ce11.bed.gz 22.7 Kb (ftp)(http) BED
GSE257439_ENCFF270MFY_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257439_ENCFF277GTR_peaks_and_background_as_input_for_IDR_ce11.bigBed 596.9 Kb (ftp)(http) BIGBED
GSE257439_ENCFF314LWD_peaks_and_background_as_input_for_IDR_ce11.bed.gz 314.8 Kb (ftp)(http) BED
GSE257439_ENCFF370DJN_peaks_and_background_as_input_for_IDR_ce10.bed.gz 314.7 Kb (ftp)(http) BED
GSE257439_ENCFF404YIG_peaks_and_background_as_input_for_IDR_ce10.bigBed 596.8 Kb (ftp)(http) BIGBED
GSE257439_ENCFF453AMX_optimal_IDR_thresholded_peaks_ce11.bigBed 71.9 Kb (ftp)(http) BIGBED
GSE257439_ENCFF555NWM_optimal_IDR_thresholded_peaks_ce10.bigBed 74.2 Kb (ftp)(http) BIGBED
GSE257439_ENCFF560RMV_optimal_IDR_thresholded_peaks_ce10.bed.gz 24.7 Kb (ftp)(http) BED
GSE257439_ENCFF936FFI_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257439_ENCFF943BUJ_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257439_RAW.tar 120.0 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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