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Series GSE257502 Query DataSets for GSE257502
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR274WQG)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing RBR-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR274WQG/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Oct 24, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8107801 TF ChIP-seq from whole organism (ENCLB728ECF)
GSM8107802 TF ChIP-seq from whole organism (ENCLB777GLK)
Relations
Reanalyzed by GSE280222

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257502_ENCFF189PDC_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257502_ENCFF273WOK_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257502_ENCFF283TJJ_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257502_ENCFF306DBC_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257502_ENCFF417XQV_optimal_IDR_thresholded_peaks_ce10.bigBed 149.3 Kb (ftp)(http) BIGBED
GSE257502_ENCFF497DJB_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257502_ENCFF513DNG_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257502_ENCFF524TUO_optimal_IDR_thresholded_peaks_ce10.bed.gz 66.0 Kb (ftp)(http) BED
GSE257502_ENCFF580RXY_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257502_ENCFF652JWM_optimal_IDR_thresholded_peaks_ce11.bed.gz 66.1 Kb (ftp)(http) BED
GSE257502_ENCFF679QFR_peaks_and_background_as_input_for_IDR_ce11.bed.gz 749.9 Kb (ftp)(http) BED
GSE257502_ENCFF823YFY_optimal_IDR_thresholded_peaks_ce11.bigBed 149.3 Kb (ftp)(http) BIGBED
GSE257502_ENCFF841ZZU_peaks_and_background_as_input_for_IDR_ce10.bed.gz 749.4 Kb (ftp)(http) BED
GSE257502_ENCFF888ZAU_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257502_RAW.tar 123.2 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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