NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE257636 Query DataSets for GSE257636
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR686FKU)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing ZIP-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR686FKU/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8108290 TF ChIP-seq from whole organism (ENCLB923ZYV)
GSM8108291 TF ChIP-seq from whole organism (ENCLB913NLQ)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257636_ENCFF097JCD_optimal_IDR_thresholded_peaks_ce10.bigBed 62.5 Kb (ftp)(http) BIGBED
GSE257636_ENCFF102PIO_optimal_IDR_thresholded_peaks_ce10.bed.gz 16.1 Kb (ftp)(http) BED
GSE257636_ENCFF112DVT_peaks_and_background_as_input_for_IDR_ce10.bigBed 229.4 Kb (ftp)(http) BIGBED
GSE257636_ENCFF301SIF_peaks_and_background_as_input_for_IDR_ce11.bed.gz 112.6 Kb (ftp)(http) BED
GSE257636_ENCFF371SSE_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257636_ENCFF451KPP_peaks_and_background_as_input_for_IDR_ce10.bed.gz 112.5 Kb (ftp)(http) BED
GSE257636_ENCFF481HXJ_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257636_ENCFF646LOC_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257636_ENCFF754BYZ_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257636_ENCFF786EDH_optimal_IDR_thresholded_peaks_ce11.bigBed 63.3 Kb (ftp)(http) BIGBED
GSE257636_ENCFF845VDV_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE257636_ENCFF846ZIE_optimal_IDR_thresholded_peaks_ce11.bed.gz 16.7 Kb (ftp)(http) BED
GSE257636_ENCFF958VEB_peaks_and_background_as_input_for_IDR_ce11.bigBed 230.1 Kb (ftp)(http) BIGBED
GSE257636_ENCFF963CQG_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257636_RAW.tar 117.6 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap