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Series GSE257664

Query DataSets for GSE257664

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR379UPR)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing DMD-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR379UPR/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8108335	TF ChIP-seq from whole organism (ENCLB928GCT)
GSM8108336	TF ChIP-seq from whole organism (ENCLB302OHD)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257664_ENCFF012TZV_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257664_ENCFF125JLB_peaks_and_background_as_input_for_IDR_ce11.bed.gz	764.4 Kb	(ftp)(http)	BED
GSE257664_ENCFF245KYH_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257664_ENCFF276KEI_optimal_IDR_thresholded_peaks_ce10.bigBed	106.6 Kb	(ftp)(http)	BIGBED
GSE257664_ENCFF315SOI_peaks_and_background_as_input_for_IDR_ce10.bed.gz	764.4 Kb	(ftp)(http)	BED
GSE257664_ENCFF349SCJ_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257664_ENCFF433JDT_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257664_ENCFF449UDD_optimal_IDR_thresholded_peaks_ce11.bigBed	73.6 Kb	(ftp)(http)	BIGBED
GSE257664_ENCFF614MFB_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257664_ENCFF779JJA_optimal_IDR_thresholded_peaks_ce11.bed.gz	16.3 Kb	(ftp)(http)	BED
GSE257664_ENCFF870VBE_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257664_ENCFF978LMK_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257664_ENCFF987IME_optimal_IDR_thresholded_peaks_ce10.bed.gz	29.4 Kb	(ftp)(http)	BED
GSE257664_ENCFF988VZO_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257664_RAW.tar	123.7 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA