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Series GSE258131 Query DataSets for GSE258131
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR607BSL)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing HIM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR607BSL/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Oct 24, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8109230 TF ChIP-seq from whole organism (ENCLB522MLL)
GSM8109231 TF ChIP-seq from whole organism (ENCLB826FDD)
Relations
Reanalyzed by GSE280222

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258131_ENCFF057GXR_peaks_and_background_as_input_for_IDR_ce10.bigBed 576.9 Kb (ftp)(http) BIGBED
GSE258131_ENCFF095TFV_peaks_and_background_as_input_for_IDR_ce10.bed.gz 311.5 Kb (ftp)(http) BED
GSE258131_ENCFF140VGP_peaks_and_background_as_input_for_IDR_ce11.bed.gz 311.0 Kb (ftp)(http) BED
GSE258131_ENCFF147ADD_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258131_ENCFF163ZLQ_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258131_ENCFF238YJK_optimal_IDR_thresholded_peaks_ce11.bed.gz 37.6 Kb (ftp)(http) BED
GSE258131_ENCFF253FRD_optimal_IDR_thresholded_peaks_ce11.bigBed 101.9 Kb (ftp)(http) BIGBED
GSE258131_ENCFF297VZF_optimal_IDR_thresholded_peaks_ce10.bigBed 100.4 Kb (ftp)(http) BIGBED
GSE258131_ENCFF749REE_optimal_IDR_thresholded_peaks_ce10.bed.gz 36.6 Kb (ftp)(http) BED
GSE258131_ENCFF758QZY_peaks_and_background_as_input_for_IDR_ce11.bigBed 575.8 Kb (ftp)(http) BIGBED
GSE258131_ENCFF823WXO_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258131_ENCFF839PQP_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258131_ENCFF864GTD_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258131_ENCFF975OJP_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258131_RAW.tar 120.2 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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