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Series GSE258318

Query DataSets for GSE258318

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR422GZR)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR422GZR/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Feb 27, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8109561	TF ChIP-seq from whole organism (ENCLB915HQI)
GSM8109562	TF ChIP-seq from whole organism (ENCLB806ISM)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258318_ENCFF066BEP_read-depth_normalized_signal_ce10.bigWig	9.7 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF091WZN_peaks_ce11.bigBed	1.3 Mb	(ftp)(http)	BIGBED
GSE258318_ENCFF098QFU_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF122KSK_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF183ITO_optimal_IDR_thresholded_peaks_ce10.bed.gz	46.0 Kb	(ftp)(http)	BED
GSE258318_ENCFF347QBA_peaks_ce11.bed.gz	761.8 Kb	(ftp)(http)	BED
GSE258318_ENCFF378THF_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF528CUS_optimal_IDR_thresholded_peaks_ce11.bigBed	152.4 Kb	(ftp)(http)	BIGBED
GSE258318_ENCFF679DYL_peaks_ce10.bigBed	1.3 Mb	(ftp)(http)	BIGBED
GSE258318_ENCFF701TSK_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF771ULG_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258318_ENCFF841BXJ_optimal_IDR_thresholded_peaks_ce11.bed.gz	45.5 Kb	(ftp)(http)	BED
GSE258318_ENCFF919WLM_optimal_IDR_thresholded_peaks_ce10.bigBed	153.6 Kb	(ftp)(http)	BIGBED
GSE258318_ENCFF977EYI_peaks_ce10.bed.gz	762.3 Kb	(ftp)(http)	BED
GSE258318_RAW.tar	124.6 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA