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Series GSE258378

Query DataSets for GSE258378

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR427JJZ)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing RNT-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR427JJZ/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (2)

GPL13657	Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL18245	Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8109666	TF ChIP-seq from whole organism (ENCLB191HXE)
GSM8109667	TF ChIP-seq from whole organism (ENCLB816KWF)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258378_ENCFF066RLV_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258378_ENCFF087HME_peaks_and_background_as_input_for_IDR_ce11.bigBed	871.1 Kb	(ftp)(http)	BIGBED
GSE258378_ENCFF093KHQ_peaks_and_background_as_input_for_IDR_ce11.bed.gz	499.2 Kb	(ftp)(http)	BED
GSE258378_ENCFF236BWC_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258378_ENCFF293JNF_peaks_and_background_as_input_for_IDR_ce10.bigBed	864.5 Kb	(ftp)(http)	BIGBED
GSE258378_ENCFF354YVJ_optimal_IDR_thresholded_peaks_ce11.bigBed	105.8 Kb	(ftp)(http)	BIGBED
GSE258378_ENCFF470JFZ_optimal_IDR_thresholded_peaks_ce10.bed.gz	45.9 Kb	(ftp)(http)	BED
GSE258378_ENCFF491RLY_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258378_ENCFF627HVT_optimal_IDR_thresholded_peaks_ce10.bigBed	118.2 Kb	(ftp)(http)	BIGBED
GSE258378_ENCFF707ICH_peaks_and_background_as_input_for_IDR_ce10.bed.gz	493.7 Kb	(ftp)(http)	BED
GSE258378_ENCFF748YTM_optimal_IDR_thresholded_peaks_ce11.bed.gz	36.2 Kb	(ftp)(http)	BED
GSE258378_ENCFF784TTW_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258378_ENCFF861XKI_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258378_ENCFF947MHX_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258378_RAW.tar	121.2 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA