NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE258413 Query DataSets for GSE258413
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR938NRX)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing IRX-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR938NRX/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8109730 TF ChIP-seq from whole organism (ENCLB332DHB)
GSM8109731 TF ChIP-seq from whole organism (ENCLB404VUV)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258413_ENCFF003YWH_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258413_ENCFF057WIK_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258413_ENCFF198PHN_peaks_and_background_as_input_for_IDR_ce11.bed.gz 715.7 Kb (ftp)(http) BED
GSE258413_ENCFF229ZWJ_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258413_ENCFF286MZZ_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258413_ENCFF304QJZ_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258413_ENCFF521VSC_optimal_IDR_thresholded_peaks_ce11.bed.gz 50.8 Kb (ftp)(http) BED
GSE258413_ENCFF538BRS_optimal_IDR_thresholded_peaks_ce10.bigBed 127.0 Kb (ftp)(http) BIGBED
GSE258413_ENCFF545QMO_optimal_IDR_thresholded_peaks_ce11.bigBed 125.9 Kb (ftp)(http) BIGBED
GSE258413_ENCFF629MEN_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258413_ENCFF693MET_control_normalized_signal_ce10.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE258413_ENCFF717HMA_peaks_and_background_as_input_for_IDR_ce10.bed.gz 717.2 Kb (ftp)(http) BED
GSE258413_ENCFF720ECL_optimal_IDR_thresholded_peaks_ce10.bed.gz 51.8 Kb (ftp)(http) BED
GSE258413_ENCFF806HLE_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258413_RAW.tar 123.0 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap