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Series GSE258414 Query DataSets for GSE258414
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR639CLM)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing SMA-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR639CLM/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8109732 TF ChIP-seq from whole organism (ENCLB571XEJ)
GSM8109733 TF ChIP-seq from whole organism (ENCLB455GOR)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258414_ENCFF081ECT_optimal_IDR_thresholded_peaks_ce10.bed.gz 131.4 Kb (ftp)(http) BED
GSE258414_ENCFF166MSH_read-depth_normalized_signal_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE258414_ENCFF209LPE_optimal_IDR_thresholded_peaks_ce11.bigBed 249.5 Kb (ftp)(http) BIGBED
GSE258414_ENCFF220NCO_optimal_IDR_thresholded_peaks_ce11.bed.gz 133.2 Kb (ftp)(http) BED
GSE258414_ENCFF242YIN_signal_of_unique_reads_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE258414_ENCFF261WBX_peaks_and_background_as_input_for_IDR_ce11.bed.gz 727.0 Kb (ftp)(http) BED
GSE258414_ENCFF335FFX_signal_of_unique_reads_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE258414_ENCFF384RGH_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258414_ENCFF624RNX_read-depth_normalized_signal_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSE258414_ENCFF729JUW_optimal_IDR_thresholded_peaks_ce10.bigBed 247.4 Kb (ftp)(http) BIGBED
GSE258414_ENCFF740CDE_peaks_and_background_as_input_for_IDR_ce10.bed.gz 727.1 Kb (ftp)(http) BED
GSE258414_ENCFF807NXC_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258414_ENCFF821DWA_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258414_ENCFF902PVU_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE258414_RAW.tar 124.4 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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