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Series GSE258859

Query DataSets for GSE258859

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR475ZYS)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing ETS-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR475ZYS/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL18245

Illumina HiSeq 2500 (Caenorhabditis elegans)

Samples (2)

GSM8110598	TF ChIP-seq from whole organism (ENCLB705BBI)
GSM8110599	TF ChIP-seq from whole organism (ENCLB318QCV)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258859_ENCFF138JZZ_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF240KDP_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF276GZI_peaks_and_background_as_input_for_IDR_ce10.bigBed	559.7 Kb	(ftp)(http)	BIGBED
GSE258859_ENCFF278FCK_optimal_IDR_thresholded_peaks_ce10.bigBed	60.2 Kb	(ftp)(http)	BIGBED
GSE258859_ENCFF478YGI_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF602KLQ_peaks_and_background_as_input_for_IDR_ce10.bed.gz	298.3 Kb	(ftp)(http)	BED
GSE258859_ENCFF602ZYM_peaks_and_background_as_input_for_IDR_ce11.bigBed	559.7 Kb	(ftp)(http)	BIGBED
GSE258859_ENCFF774PQC_optimal_IDR_thresholded_peaks_ce11.bed.gz	12.0 Kb	(ftp)(http)	BED
GSE258859_ENCFF774TFK_optimal_IDR_thresholded_peaks_ce10.bed.gz	14.8 Kb	(ftp)(http)	BED
GSE258859_ENCFF834MNV_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF918LKA_signal_of_unique_reads_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF929CVA_peaks_and_background_as_input_for_IDR_ce11.bed.gz	298.4 Kb	(ftp)(http)	BED
GSE258859_ENCFF967RMF_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258859_ENCFF991KTZ_optimal_IDR_thresholded_peaks_ce11.bigBed	56.7 Kb	(ftp)(http)	BIGBED
GSE258859_RAW.tar	120.4 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA